Cargando…

A Three Stage Integrative Pathway Search (TIPS(©)) framework to identify toxicity relevant genes and pathways

BACKGROUND: The ability to obtain profiles of gene expressions, proteins and metabolites with the advent of high throughput technologies has advanced the study of pathway and network reconstruction. Genome-wide network reconstruction requires either interaction measurements or large amount of pertur...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Zheng, Srivastava, Shireesh, Mittal, Sheenu, Yang, Xuerui, Sheng, Lufang, Chan, Christina
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1906836/ https://www.ncbi.nlm.nih.gov/pubmed/17570844 http://dx.doi.org/10.1186/1471-2105-8-202

Ejemplares similares

A hierarchical approach employing metabolic and gene expression profiles to identify the pathways that confer cytotoxicity in HepG2 cells
por: Li, Zheng, et al.
Publicado: (2007)

Identification of genes that regulate multiple cellular processes/responses in the context of lipotoxicity to hepatoma cells
por: Srivastava, Shireesh, et al.
Publicado: (2007)

A framework using topological pathways for deeper analysis of transcriptome data
por: Zhao, Yue, et al.
Publicado: (2020)

Evaluating glymphatic pathway function utilizing clinically relevant intrathecal infusion of CSF tracer
por: Yang, Lijun, et al.
Publicado: (2013)

A novel hybrid framework for metabolic pathways prediction based on the graph attention network
por: Yang, Zhihui, et al.
Publicado: (2022)

A two-stage microbial association mapping framework with advanced FDR control
por: Hu, Jiyuan, et al.
Publicado: (2018)

DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference
por: Jiao, Yan, et al.
Publicado: (2011)

A flexible dose-response modeling framework based on continuous toxicity outcomes in phase I cancer clinical trials
por: Lee, Se Yoon
Publicado: (2023)

TIPS: a system for automated image-based phenotyping of maize tassels
por: Gage, Joseph L., et al.
Publicado: (2017)

A search engine to identify pathway genes from expression data on multiple organisms
por: Chen, Chunnuan, et al.
Publicado: (2007)

A graph-search framework for associating gene identifiers with documents
por: Cohen, William W, et al.
Publicado: (2006)

An inexpensive method of small paraffin tissue microarrays using mechanical pencil tips
por: Shebl, Abdelhadi M, et al.
Publicado: (2011)

Use of the phaco tip technique for lens cleavage and removal during cataract surgery
por: Masuda, Yoichiro, et al.
Publicado: (2016)

Investigating the relevance of major signaling pathways in cancer survival using a biologically meaningful deep learning model
por: Feng, Jiarui, et al.
Publicado: (2021)

Searching and synthesising ‘grey literature’ and ‘grey information’ in public health: critical reflections on three case studies
por: Adams, Jean, et al.
Publicado: (2016)

Mining pathway associations for disease-related pathway activity analysis based on gene expression and methylation data
por: Lee, Hyeonjeong, et al.
Publicado: (2017)

BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways
por: Kim, Inyoung, et al.
Publicado: (2018)

Measuring phacoemulsification groove depth using probe tip dimensions and biometry lens thickness readings
por: Dunne, Kevin, et al.
Publicado: (2016)

Pilot and feasibility studies: extending the conceptual framework
por: Bond, Christine, et al.
Publicado: (2023)

Pathway-based Biomarkers for Breast Cancer in Proteomics
por: Zhang, Fan, et al.
Publicado: (2015)

A Novel Method Incorporating Gene Ontology Information for Unsupervised Clustering and Feature Selection
por: Srivastava, Shireesh, et al.
Publicado: (2008)

Identification of Predictive Pathways for Non-Hodgkin Lymphoma Prognosis
por: Han, Xuesong, et al.
Publicado: (2010)

Shoot tip culture: a step towards 13C metabolite flux analysis of sink leaf metabolism
por: Koley, Somnath, et al.
Publicado: (2019)

The three stages of building and testing mid-level theories in a realist RCT: a theoretical and methodological case-example
por: Jamal, Farah, et al.
Publicado: (2015)

Longitudinal multi-centre brain imaging studies: guidelines and practical tips for accurate and reproducible imaging endpoints and data sharing
por: Wiseman, Stewart J., et al.
Publicado: (2019)

Engineering lentiviral vectors for modulation of dendritic cell apoptotic pathways
por: Wang, James CM, et al.
Publicado: (2013)

Overlapping Group Logistic Regression with Applications to Genetic Pathway Selection
por: Zeng, Yaohui, et al.
Publicado: (2016)

Hierarchical structural component model for pathway analysis of common variants
por: Jiang, Nan, et al.
Publicado: (2020)

Probabilistic prioritization of candidate pathway association with pathway score
por: Lin, Shu-Ju, et al.
Publicado: (2018)

A new approach for cytokinin isolation from Arabidopsis tissues using miniaturized purification: pipette tip solid-phase extraction
por: Svačinová, Jana, et al.
Publicado: (2012)

Development of a molecular method for the rapid screening and identification of the three functionally relevant polymorphisms in the human TAS2R38 receptor gene in studies of sensitivity to the bitter taste of PROP
por: Orrù, Roberto, et al.
Publicado: (2015)

Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data
por: Holford, Matthew E., et al.
Publicado: (2009)

Bayesian Joint Selection of Genes and Pathways: Applications in Multiple Myeloma Genomics
por: Zhang, Lin, et al.
Publicado: (2014)

Attributing diseases to multiple pathways: a causal-pie modeling approach
por: Chen, Christine, et al.
Publicado: (2018)

Systems biology for identifying liver toxicity pathways
por: Li, Zheng, et al.
Publicado: (2009)

The validation of a three-stage screening methodology for detecting active convulsive epilepsy in population-based studies in health and demographic surveillance systems
por: Ngugi, Anthony K, et al.
Publicado: (2012)

Searching for health equity: validation of a search filter for ethnic and socioeconomic inequalities in transport
por: Hosking, Jamie, et al.
Publicado: (2019)

Responder analyses and the assessment of a clinically relevant treatment effect
por: Snapinn, Steven M, et al.
Publicado: (2007)

A generative co-design framework for healthcare innovation: development and application of an end-user engagement framework
por: Bird, M., et al.
Publicado: (2021)

A research pathway for the study of the delivery and disposition of nebulised antibiotics: an incremental approach from in vitro to large animal models
por: Dhanani, Jayesh A., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_jjuk3j545rl47ie5fn9au20pup