Cargando…

Composition Profiler: a tool for discovery and visualization of amino acid composition differences

BACKGROUND: Composition Profiler is a web-based tool for semi-automatic discovery of enrichment or depletion of amino acids, either individually or grouped by their physico-chemical or structural properties. RESULTS: The program takes two samples of amino acids as input: a query sample and a referen...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vacic, Vladimir, Uversky, Vladimir N, Dunker, A Keith, Lonardi, Stefano
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1914087/ https://www.ncbi.nlm.nih.gov/pubmed/17578581 http://dx.doi.org/10.1186/1471-2105-8-211

Ejemplares similares

Magallanes: a web services discovery and automatic workflow composition tool
por: Ríos, Javier, et al.
Publicado: (2009)

An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices
por: Bulka, Blazej, et al.
Publicado: (2006)

Reference-agnostic representation and visualization of pan-genomes
por: Liang, Qihua, et al.
Publicado: (2021)

A parallel method for enumerating amino acid compositions and masses of all theoretical peptides
por: Nefedov, Alexey V, et al.
Publicado: (2011)

IMGT/Collier-de-Perles: a two-dimensional visualization tool for amino acid domain sequences
por: Vlachakis, Dimitrios, et al.
Publicado: (2013)

TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins
por: Garrow, Andrew G, et al.
Publicado: (2005)

VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
por: Mori, Hiroshi, et al.
Publicado: (2010)

fLPS: Fast discovery of compositional biases for the protein universe
por: Harrison, Paul M.
Publicado: (2017)

omicplotR: visualizing omic datasets as compositions
por: Giguere, Daniel J., et al.
Publicado: (2019)

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
por: Eden, Eran, et al.
Publicado: (2009)

Shoelaces: an interactive tool for ribosome profiling processing and visualization
por: Birkeland, Åsmund, et al.
Publicado: (2018)

An online model composition tool for system biology models
por: Coskun, Sarp A, et al.
Publicado: (2013)

MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery
por: Hosseini, Parsa, et al.
Publicado: (2012)

An interactive tool for visualization of relationships between gene expression profiles
por: Ruzanov, Peter, et al.
Publicado: (2006)

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing
por: Mori, Hiroshi, et al.
Publicado: (2018)

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets
por: Zheng, Jie, et al.
Publicado: (2006)

NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data
por: Vainshtein, Yevhen, et al.
Publicado: (2017)

DAVID: Database for Annotation, Visualization, and Integrated Discovery
por: Dennis, Glynn, et al.
Publicado: (2003)

SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events
por: Bergstrom, Erik N., et al.
Publicado: (2019)

ANCAC: amino acid, nucleotide, and codon analysis of COGs – a tool for sequence bias analysis in microbial orthologs
por: Meiler, Arno, et al.
Publicado: (2012)

CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution
por: Guerra Maldonado, Juan F., et al.
Publicado: (2020)

The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis
por: Chan, Yen On, et al.
Publicado: (2023)

Visualization-based discovery and analysis of genomic aberrations in microarray data
por: Myers, Chad L, et al.
Publicado: (2005)

SVARAP and aSVARAP: simple tools for quantitative analysis of nucleotide and amino acid variability and primer selection for clinical microbiology
por: Colson, Philippe, et al.
Publicado: (2006)

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
por: Moore, Marten, et al.
Publicado: (2020)

Open discovery: An integrated live Linux platform of Bioinformatics tools
por: Vetrivel, Umashankar, et al.
Publicado: (2008)

The unfoldomics decade: an update on intrinsically disordered proteins
por: Dunker, A Keith, et al.
Publicado: (2008)

MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences
por: Barsnes, Harald, et al.
Publicado: (2006)

GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions
por: Doherty, Jason M, et al.
Publicado: (2006)

SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles
por: Lopez, David, et al.
Publicado: (2017)

Scaffold Hunter: a comprehensive visual analytics framework for drug discovery
por: Schäfer, Till, et al.
Publicado: (2017)

NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences
por: Tzou, Philip L., et al.
Publicado: (2017)

Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
por: Hough, Soren H., et al.
Publicado: (2017)

The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure
por: Uversky, Vladimir N., et al.
Publicado: (2013)

SNP-VISTA: An interactive SNP visualization tool
por: Shah, Nameeta, et al.
Publicado: (2005)

GIV: A Tool for Genomic Islands Visualization
por: Che, Dongsheng, et al.
Publicado: (2013)

THoR: a tool for domain discovery and curation of multiple alignments
por: Dickens, Nicholas J, et al.
Publicado: (2003)

SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
por: Biro, Jan C, et al.
Publicado: (2005)

BEACON: automated tool for Bacterial GEnome Annotation ComparisON
por: Kalkatawi, Manal, et al.
Publicado: (2015)

Length-dependent prediction of protein intrinsic disorder
por: Peng, Kang, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_f24ahi3c518d53ejo948ps9drk