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Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery
BACKGROUND: We present an analysis of the utility of multispectral versus standard RGB imagery for routine H&E stained histopathology images, in particular for pixel-level classification of nuclei. Our multispectral imagery has 29 spectral bands, spaced 10 nm within the visual range of 420–700 n...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924513/ https://www.ncbi.nlm.nih.gov/pubmed/17634098 http://dx.doi.org/10.1186/1471-2121-8-S1-S8 |
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author | Boucheron, Laura E Bi, Zhiqiang Harvey, Neal R Manjunath, BS Rimm, David L |
author_facet | Boucheron, Laura E Bi, Zhiqiang Harvey, Neal R Manjunath, BS Rimm, David L |
author_sort | Boucheron, Laura E |
collection | PubMed |
description | BACKGROUND: We present an analysis of the utility of multispectral versus standard RGB imagery for routine H&E stained histopathology images, in particular for pixel-level classification of nuclei. Our multispectral imagery has 29 spectral bands, spaced 10 nm within the visual range of 420–700 nm. It has been hypothesized that the additional spectral bands contain further information useful for classification as compared to the 3 standard bands of RGB imagery. We present analyses of our data designed to test this hypothesis. RESULTS: For classification using all available image bands, we find the best performance (equal tradeoff between detection rate and false alarm rate) is obtained from either the multispectral or our "ccd" RGB imagery, with an overall increase in performance of 0.79% compared to the next best performing image type. For classification using single image bands, the single best multispectral band (in the red portion of the spectrum) gave a performance increase of 0.57%, compared to performance of the single best RGB band (red). Additionally, red bands had the highest coefficients/preference in our classifiers. Principal components analysis of the multispectral imagery indicates only two significant image bands, which is not surprising given the presence of two stains. CONCLUSION: Our results indicate that multispectral imagery for routine H&E stained histopathology provides minimal additional spectral information for a pixel-level nuclear classification task than would standard RGB imagery. |
format | Text |
id | pubmed-1924513 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-19245132007-07-18 Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery Boucheron, Laura E Bi, Zhiqiang Harvey, Neal R Manjunath, BS Rimm, David L BMC Cell Biol Research BACKGROUND: We present an analysis of the utility of multispectral versus standard RGB imagery for routine H&E stained histopathology images, in particular for pixel-level classification of nuclei. Our multispectral imagery has 29 spectral bands, spaced 10 nm within the visual range of 420–700 nm. It has been hypothesized that the additional spectral bands contain further information useful for classification as compared to the 3 standard bands of RGB imagery. We present analyses of our data designed to test this hypothesis. RESULTS: For classification using all available image bands, we find the best performance (equal tradeoff between detection rate and false alarm rate) is obtained from either the multispectral or our "ccd" RGB imagery, with an overall increase in performance of 0.79% compared to the next best performing image type. For classification using single image bands, the single best multispectral band (in the red portion of the spectrum) gave a performance increase of 0.57%, compared to performance of the single best RGB band (red). Additionally, red bands had the highest coefficients/preference in our classifiers. Principal components analysis of the multispectral imagery indicates only two significant image bands, which is not surprising given the presence of two stains. CONCLUSION: Our results indicate that multispectral imagery for routine H&E stained histopathology provides minimal additional spectral information for a pixel-level nuclear classification task than would standard RGB imagery. BioMed Central 2007-07-10 /pmc/articles/PMC1924513/ /pubmed/17634098 http://dx.doi.org/10.1186/1471-2121-8-S1-S8 Text en Copyright © 2007 Boucheron et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Boucheron, Laura E Bi, Zhiqiang Harvey, Neal R Manjunath, BS Rimm, David L Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title | Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title_full | Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title_fullStr | Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title_full_unstemmed | Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title_short | Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
title_sort | utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924513/ https://www.ncbi.nlm.nih.gov/pubmed/17634098 http://dx.doi.org/10.1186/1471-2121-8-S1-S8 |
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