Tilescope: online analysis pipeline for high-density tiling microarray data

We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data . In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic fea...

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Detalles Bibliográficos
Autores principales: Zhang, Zhengdong D, Rozowsky, Joel, Lam, Hugo YK, Du, Jiang, Snyder, Michael, Gerstein, Mark
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1929149/
https://www.ncbi.nlm.nih.gov/pubmed/17501994
http://dx.doi.org/10.1186/gb-2007-8-5-r81
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author Zhang, Zhengdong D
Rozowsky, Joel
Lam, Hugo YK
Du, Jiang
Snyder, Michael
Gerstein, Mark
author_facet Zhang, Zhengdong D
Rozowsky, Joel
Lam, Hugo YK
Du, Jiang
Snyder, Michael
Gerstein, Mark
author_sort Zhang, Zhengdong D
collection PubMed
description We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data . In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.
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spelling pubmed-19291492007-07-21 Tilescope: online analysis pipeline for high-density tiling microarray data Zhang, Zhengdong D Rozowsky, Joel Lam, Hugo YK Du, Jiang Snyder, Michael Gerstein, Mark Genome Biol Software We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data . In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis. BioMed Central 2007 2007-05-14 /pmc/articles/PMC1929149/ /pubmed/17501994 http://dx.doi.org/10.1186/gb-2007-8-5-r81 Text en Copyright © 2007 Zhang et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Zhang, Zhengdong D
Rozowsky, Joel
Lam, Hugo YK
Du, Jiang
Snyder, Michael
Gerstein, Mark
Tilescope: online analysis pipeline for high-density tiling microarray data
title Tilescope: online analysis pipeline for high-density tiling microarray data
title_full Tilescope: online analysis pipeline for high-density tiling microarray data
title_fullStr Tilescope: online analysis pipeline for high-density tiling microarray data
title_full_unstemmed Tilescope: online analysis pipeline for high-density tiling microarray data
title_short Tilescope: online analysis pipeline for high-density tiling microarray data
title_sort tilescope: online analysis pipeline for high-density tiling microarray data
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1929149/
https://www.ncbi.nlm.nih.gov/pubmed/17501994
http://dx.doi.org/10.1186/gb-2007-8-5-r81
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AT rozowskyjoel tilescopeonlineanalysispipelineforhighdensitytilingmicroarraydata
AT lamhugoyk tilescopeonlineanalysispipelineforhighdensitytilingmicroarraydata
AT dujiang tilescopeonlineanalysispipelineforhighdensitytilingmicroarraydata
AT snydermichael tilescopeonlineanalysispipelineforhighdensitytilingmicroarraydata
AT gersteinmark tilescopeonlineanalysispipelineforhighdensitytilingmicroarraydata

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