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CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography

An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been pr...

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Detalles Bibliográficos
Autores principales: Thireou, Trias, Atlamazoglou, Vassilis, Levakis, Manolis, Eliopoulos, Elias, Hountas, Athanassios, Tsoucaris, George, Bethanis, Kostas
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933117/
https://www.ncbi.nlm.nih.gov/pubmed/17488848
http://dx.doi.org/10.1093/nar/gkm225
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author Thireou, Trias
Atlamazoglou, Vassilis
Levakis, Manolis
Eliopoulos, Elias
Hountas, Athanassios
Tsoucaris, George
Bethanis, Kostas
author_facet Thireou, Trias
Atlamazoglou, Vassilis
Levakis, Manolis
Eliopoulos, Elias
Hountas, Athanassios
Tsoucaris, George
Bethanis, Kostas
author_sort Thireou, Trias
collection PubMed
description An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been proposed. The algorithm is based on alternately transferring the phase information between the twin variable sets. The phase extension and refinement is evaluated with the crystallographic symmetry test by deliberately sacrificing the space-group symmetry in the starting set, then using its re-appearance as a criterion for correctness. Here we present a software program (CrysTwiV) that runs on the web (freely available at: http://btweb.aua.gr/crystwiv/) implementing the above-mentioned method.
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spelling pubmed-19331172007-07-31 CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography Thireou, Trias Atlamazoglou, Vassilis Levakis, Manolis Eliopoulos, Elias Hountas, Athanassios Tsoucaris, George Bethanis, Kostas Nucleic Acids Res Articles An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been proposed. The algorithm is based on alternately transferring the phase information between the twin variable sets. The phase extension and refinement is evaluated with the crystallographic symmetry test by deliberately sacrificing the space-group symmetry in the starting set, then using its re-appearance as a criterion for correctness. Here we present a software program (CrysTwiV) that runs on the web (freely available at: http://btweb.aua.gr/crystwiv/) implementing the above-mentioned method. Oxford University Press 2007-07 2007-05-08 /pmc/articles/PMC1933117/ /pubmed/17488848 http://dx.doi.org/10.1093/nar/gkm225 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Thireou, Trias
Atlamazoglou, Vassilis
Levakis, Manolis
Eliopoulos, Elias
Hountas, Athanassios
Tsoucaris, George
Bethanis, Kostas
CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title_full CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title_fullStr CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title_full_unstemmed CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title_short CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
title_sort crysttwiv: a webserver for automated phase extension and refinement in x-ray crystallography
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933117/
https://www.ncbi.nlm.nih.gov/pubmed/17488848
http://dx.doi.org/10.1093/nar/gkm225
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