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CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography
An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been pr...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933117/ https://www.ncbi.nlm.nih.gov/pubmed/17488848 http://dx.doi.org/10.1093/nar/gkm225 |
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author | Thireou, Trias Atlamazoglou, Vassilis Levakis, Manolis Eliopoulos, Elias Hountas, Athanassios Tsoucaris, George Bethanis, Kostas |
author_facet | Thireou, Trias Atlamazoglou, Vassilis Levakis, Manolis Eliopoulos, Elias Hountas, Athanassios Tsoucaris, George Bethanis, Kostas |
author_sort | Thireou, Trias |
collection | PubMed |
description | An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been proposed. The algorithm is based on alternately transferring the phase information between the twin variable sets. The phase extension and refinement is evaluated with the crystallographic symmetry test by deliberately sacrificing the space-group symmetry in the starting set, then using its re-appearance as a criterion for correctness. Here we present a software program (CrysTwiV) that runs on the web (freely available at: http://btweb.aua.gr/crystwiv/) implementing the above-mentioned method. |
format | Text |
id | pubmed-1933117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-19331172007-07-31 CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography Thireou, Trias Atlamazoglou, Vassilis Levakis, Manolis Eliopoulos, Elias Hountas, Athanassios Tsoucaris, George Bethanis, Kostas Nucleic Acids Res Articles An important stage in macromolecular crystallography is that of phase extension and refinement when initial phase estimates are available from isomorphous replacement or anomalous scattering or other methods. For this purpose, an alternative method called the twin variables (TwiV) method has been proposed. The algorithm is based on alternately transferring the phase information between the twin variable sets. The phase extension and refinement is evaluated with the crystallographic symmetry test by deliberately sacrificing the space-group symmetry in the starting set, then using its re-appearance as a criterion for correctness. Here we present a software program (CrysTwiV) that runs on the web (freely available at: http://btweb.aua.gr/crystwiv/) implementing the above-mentioned method. Oxford University Press 2007-07 2007-05-08 /pmc/articles/PMC1933117/ /pubmed/17488848 http://dx.doi.org/10.1093/nar/gkm225 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Thireou, Trias Atlamazoglou, Vassilis Levakis, Manolis Eliopoulos, Elias Hountas, Athanassios Tsoucaris, George Bethanis, Kostas CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title | CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title_full | CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title_fullStr | CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title_full_unstemmed | CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title_short | CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallography |
title_sort | crysttwiv: a webserver for automated phase extension and refinement in x-ray crystallography |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933117/ https://www.ncbi.nlm.nih.gov/pubmed/17488848 http://dx.doi.org/10.1093/nar/gkm225 |
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