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LIPID MAPS online tools for lipid research

The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemic...

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Detalles Bibliográficos
Autores principales: Fahy, Eoin, Sud, Manish, Cotter, Dawn, Subramaniam, Shankar
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933166/
https://www.ncbi.nlm.nih.gov/pubmed/17584797
http://dx.doi.org/10.1093/nar/gkm324
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author Fahy, Eoin
Sud, Manish
Cotter, Dawn
Subramaniam, Shankar
author_facet Fahy, Eoin
Sud, Manish
Cotter, Dawn
Subramaniam, Shankar
author_sort Fahy, Eoin
collection PubMed
description The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemical structures, along with corresponding systematic names and ontological information. The structure-drawing tools are available for six categories of lipids: (i) fatty acyls, (ii) glycerolipids, (iii) glycerophospholipids, (iv) cardiolipins, (v) sphingolipids and (vi) sterols. Within each category, the structure-drawing tools support the specification of various parameters such as chain lengths at a specific sn position, head groups, double bond positions and stereochemistry to generate a specific lipid structure. The structure-drawing tools have also been integrated with a second set of online tools which predict possible lipid structures from precursor-ion and product-ion MS experimental data. The MS prediction tools are available for three categories of lipids: (i) mono/di/triacylglycerols, (ii) glycerophospholipids and (iii) cardiolipins. The LIPID MAPS online tools are publicly available at www.lipidmaps.org/tools/.
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spelling pubmed-19331662007-07-31 LIPID MAPS online tools for lipid research Fahy, Eoin Sud, Manish Cotter, Dawn Subramaniam, Shankar Nucleic Acids Res Articles The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemical structures, along with corresponding systematic names and ontological information. The structure-drawing tools are available for six categories of lipids: (i) fatty acyls, (ii) glycerolipids, (iii) glycerophospholipids, (iv) cardiolipins, (v) sphingolipids and (vi) sterols. Within each category, the structure-drawing tools support the specification of various parameters such as chain lengths at a specific sn position, head groups, double bond positions and stereochemistry to generate a specific lipid structure. The structure-drawing tools have also been integrated with a second set of online tools which predict possible lipid structures from precursor-ion and product-ion MS experimental data. The MS prediction tools are available for three categories of lipids: (i) mono/di/triacylglycerols, (ii) glycerophospholipids and (iii) cardiolipins. The LIPID MAPS online tools are publicly available at www.lipidmaps.org/tools/. Oxford University Press 2007-07 2007-06-21 /pmc/articles/PMC1933166/ /pubmed/17584797 http://dx.doi.org/10.1093/nar/gkm324 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Fahy, Eoin
Sud, Manish
Cotter, Dawn
Subramaniam, Shankar
LIPID MAPS online tools for lipid research
title LIPID MAPS online tools for lipid research
title_full LIPID MAPS online tools for lipid research
title_fullStr LIPID MAPS online tools for lipid research
title_full_unstemmed LIPID MAPS online tools for lipid research
title_short LIPID MAPS online tools for lipid research
title_sort lipid maps online tools for lipid research
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933166/
https://www.ncbi.nlm.nih.gov/pubmed/17584797
http://dx.doi.org/10.1093/nar/gkm324
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