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LIPID MAPS online tools for lipid research
The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemic...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933166/ https://www.ncbi.nlm.nih.gov/pubmed/17584797 http://dx.doi.org/10.1093/nar/gkm324 |
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author | Fahy, Eoin Sud, Manish Cotter, Dawn Subramaniam, Shankar |
author_facet | Fahy, Eoin Sud, Manish Cotter, Dawn Subramaniam, Shankar |
author_sort | Fahy, Eoin |
collection | PubMed |
description | The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemical structures, along with corresponding systematic names and ontological information. The structure-drawing tools are available for six categories of lipids: (i) fatty acyls, (ii) glycerolipids, (iii) glycerophospholipids, (iv) cardiolipins, (v) sphingolipids and (vi) sterols. Within each category, the structure-drawing tools support the specification of various parameters such as chain lengths at a specific sn position, head groups, double bond positions and stereochemistry to generate a specific lipid structure. The structure-drawing tools have also been integrated with a second set of online tools which predict possible lipid structures from precursor-ion and product-ion MS experimental data. The MS prediction tools are available for three categories of lipids: (i) mono/di/triacylglycerols, (ii) glycerophospholipids and (iii) cardiolipins. The LIPID MAPS online tools are publicly available at www.lipidmaps.org/tools/. |
format | Text |
id | pubmed-1933166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-19331662007-07-31 LIPID MAPS online tools for lipid research Fahy, Eoin Sud, Manish Cotter, Dawn Subramaniam, Shankar Nucleic Acids Res Articles The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A simple online interface has been developed to enable an end-user to rapidly generate a variety of lipid chemical structures, along with corresponding systematic names and ontological information. The structure-drawing tools are available for six categories of lipids: (i) fatty acyls, (ii) glycerolipids, (iii) glycerophospholipids, (iv) cardiolipins, (v) sphingolipids and (vi) sterols. Within each category, the structure-drawing tools support the specification of various parameters such as chain lengths at a specific sn position, head groups, double bond positions and stereochemistry to generate a specific lipid structure. The structure-drawing tools have also been integrated with a second set of online tools which predict possible lipid structures from precursor-ion and product-ion MS experimental data. The MS prediction tools are available for three categories of lipids: (i) mono/di/triacylglycerols, (ii) glycerophospholipids and (iii) cardiolipins. The LIPID MAPS online tools are publicly available at www.lipidmaps.org/tools/. Oxford University Press 2007-07 2007-06-21 /pmc/articles/PMC1933166/ /pubmed/17584797 http://dx.doi.org/10.1093/nar/gkm324 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Fahy, Eoin Sud, Manish Cotter, Dawn Subramaniam, Shankar LIPID MAPS online tools for lipid research |
title | LIPID MAPS online tools for lipid research |
title_full | LIPID MAPS online tools for lipid research |
title_fullStr | LIPID MAPS online tools for lipid research |
title_full_unstemmed | LIPID MAPS online tools for lipid research |
title_short | LIPID MAPS online tools for lipid research |
title_sort | lipid maps online tools for lipid research |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933166/ https://www.ncbi.nlm.nih.gov/pubmed/17584797 http://dx.doi.org/10.1093/nar/gkm324 |
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