Multiple whole genome alignments and novel biomedical applications at the VISTA portal

The VISTA portal for comparative genomics is designed to give biomedical scientists a unified set of tools to lead them from the raw DNA sequences through the alignment and annotation to the visualization of the results. The VISTA portal also hosts the alignments of a number of genomes computed by o...

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Detalles Bibliográficos
Autores principales: Brudno, Michael, Poliakov, Alexander, Minovitsky, Simon, Ratnere, Igor, Dubchak, Inna
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933192/
https://www.ncbi.nlm.nih.gov/pubmed/17488840
http://dx.doi.org/10.1093/nar/gkm279
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author Brudno, Michael
Poliakov, Alexander
Minovitsky, Simon
Ratnere, Igor
Dubchak, Inna
author_facet Brudno, Michael
Poliakov, Alexander
Minovitsky, Simon
Ratnere, Igor
Dubchak, Inna
author_sort Brudno, Michael
collection PubMed
description The VISTA portal for comparative genomics is designed to give biomedical scientists a unified set of tools to lead them from the raw DNA sequences through the alignment and annotation to the visualization of the results. The VISTA portal also hosts the alignments of a number of genomes computed by our group, allowing users to study the regions of their interest without having to manually download the individual sequences. Here we describe various algorithmic and functional improvements implemented in the VISTA portal over the last 2 years. The VISTA Portal is accessible at http://genome.lbl.gov/vista.
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spelling pubmed-19331922007-07-31 Multiple whole genome alignments and novel biomedical applications at the VISTA portal Brudno, Michael Poliakov, Alexander Minovitsky, Simon Ratnere, Igor Dubchak, Inna Nucleic Acids Res Articles The VISTA portal for comparative genomics is designed to give biomedical scientists a unified set of tools to lead them from the raw DNA sequences through the alignment and annotation to the visualization of the results. The VISTA portal also hosts the alignments of a number of genomes computed by our group, allowing users to study the regions of their interest without having to manually download the individual sequences. Here we describe various algorithmic and functional improvements implemented in the VISTA portal over the last 2 years. The VISTA Portal is accessible at http://genome.lbl.gov/vista. Oxford University Press 2007-07 2007-05-08 /pmc/articles/PMC1933192/ /pubmed/17488840 http://dx.doi.org/10.1093/nar/gkm279 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Brudno, Michael
Poliakov, Alexander
Minovitsky, Simon
Ratnere, Igor
Dubchak, Inna
Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title_full Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title_fullStr Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title_full_unstemmed Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title_short Multiple whole genome alignments and novel biomedical applications at the VISTA portal
title_sort multiple whole genome alignments and novel biomedical applications at the vista portal
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933192/
https://www.ncbi.nlm.nih.gov/pubmed/17488840
http://dx.doi.org/10.1093/nar/gkm279
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