FGF: A web tool for Fishing Gene Family in a whole genome database

Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program...

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Detalles Bibliográficos
Autores principales: Zheng, Hongkun, Shi, Junjie, Fang, Xiaodong, Li, Yuan, Vang, Søren, Fan, Wei, Wang, Junyi, Zhang, Zhang, Wang, Wen, Kristiansen, Karsten, Wang, Jun
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933194/
https://www.ncbi.nlm.nih.gov/pubmed/17584790
http://dx.doi.org/10.1093/nar/gkm426
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author Zheng, Hongkun
Shi, Junjie
Fang, Xiaodong
Li, Yuan
Vang, Søren
Fan, Wei
Wang, Junyi
Zhang, Zhang
Wang, Wen
Kristiansen, Karsten
Wang, Jun
author_facet Zheng, Hongkun
Shi, Junjie
Fang, Xiaodong
Li, Yuan
Vang, Søren
Fan, Wei
Wang, Junyi
Zhang, Zhang
Wang, Wen
Kristiansen, Karsten
Wang, Jun
author_sort Zheng, Hongkun
collection PubMed
description Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program to efficiently search for and identify gene families. The FGF output displays the results as visual phylogenetic trees including information on gene structure, chromosome position, duplication fate and selective pressure. It is particularly useful to identify pseudogenes and detect changes in gene structure. FGF is freely available on a web server at http://fgf.genomics.org.cn/
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spelling pubmed-19331942007-07-31 FGF: A web tool for Fishing Gene Family in a whole genome database Zheng, Hongkun Shi, Junjie Fang, Xiaodong Li, Yuan Vang, Søren Fan, Wei Wang, Junyi Zhang, Zhang Wang, Wen Kristiansen, Karsten Wang, Jun Nucleic Acids Res Articles Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program to efficiently search for and identify gene families. The FGF output displays the results as visual phylogenetic trees including information on gene structure, chromosome position, duplication fate and selective pressure. It is particularly useful to identify pseudogenes and detect changes in gene structure. FGF is freely available on a web server at http://fgf.genomics.org.cn/ Oxford University Press 2007-07 2007-06-21 /pmc/articles/PMC1933194/ /pubmed/17584790 http://dx.doi.org/10.1093/nar/gkm426 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Zheng, Hongkun
Shi, Junjie
Fang, Xiaodong
Li, Yuan
Vang, Søren
Fan, Wei
Wang, Junyi
Zhang, Zhang
Wang, Wen
Kristiansen, Karsten
Wang, Jun
FGF: A web tool for Fishing Gene Family in a whole genome database
title FGF: A web tool for Fishing Gene Family in a whole genome database
title_full FGF: A web tool for Fishing Gene Family in a whole genome database
title_fullStr FGF: A web tool for Fishing Gene Family in a whole genome database
title_full_unstemmed FGF: A web tool for Fishing Gene Family in a whole genome database
title_short FGF: A web tool for Fishing Gene Family in a whole genome database
title_sort fgf: a web tool for fishing gene family in a whole genome database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933194/
https://www.ncbi.nlm.nih.gov/pubmed/17584790
http://dx.doi.org/10.1093/nar/gkm426
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