Cargando…

COMPASS server for remote homology inference

COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles from given MSAs, constructs local profile-profile alignments and analytically estimates E-values for the detected similari...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sadreyev, Ruslan I., Tang, Ming, Kim, Bong-Hyun, Grishin, Nick V.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2007
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933213/ https://www.ncbi.nlm.nih.gov/pubmed/17517780 http://dx.doi.org/10.1093/nar/gkm293

Ejemplares similares

COMPASS server for homology detection: improved statistical accuracy, speed and functionality
por: Sadreyev, Ruslan I., et al.
Publicado: (2009)

PROCAIN server for remote protein sequence similarity search
por: Wang, Yong, et al.
Publicado: (2009)

Profile–profile comparisons by COMPASS predict intricate homologies between protein families
por: Sadreyev, Ruslan I., et al.
Publicado: (2003)

HorA web server to infer homology between proteins using sequence and structural similarity
por: Kim, Bong-Hyun, et al.
Publicado: (2009)

A comprehensive system for evaluation of remote sequence similarity detection
por: Qi, Yuan, et al.
Publicado: (2007)

Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds
por: Sadreyev, Ruslan I, et al.
Publicado: (2006)

PROMALS web server for accurate multiple protein sequence alignments
por: Pei, Jimin, et al.
Publicado: (2007)

Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
por: Sadreyev, Ruslan I, et al.
Publicado: (2004)

Accurate statistical model of comparison between multiple sequence alignments
por: Sadreyev, Ruslan I., et al.
Publicado: (2008)

A tale of two ferredoxins: sequence similarity and structural differences
por: Krishna, S Sri, et al.
Publicado: (2006)

Considering scores between unrelated proteins in the search database improves profile comparison
por: Sadreyev, Ruslan I, et al.
Publicado: (2009)

PROCAIN: protein profile comparison with assisting information
por: Wang, Yong, et al.
Publicado: (2009)

Rankprop: a web server for protein remote homology detection
por: Melvin, Iain, et al.
Publicado: (2009)

PROMALS3D web server for accurate multiple protein sequence and structure alignments
por: Pei, Jimin, et al.
Publicado: (2008)

Structure similarity measure with penalty for close non-equivalent residues
por: Sadreyev, Ruslan I., et al.
Publicado: (2009)

Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways
por: Sadreyev, Ruslan I., et al.
Publicado: (2009)

Analysis of CASP8 targets, predictions and assessment methods
por: Shi, ShuoYong, et al.
Publicado: (2009)

MESSA: MEta-Server for protein Sequence Analysis
por: Cong, Qian, et al.
Publicado: (2012)

Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains
por: Bhadra, R., et al.
Publicado: (2006)

PubServer: literature searches by homology
por: Jaroszewski, Lukasz, et al.
Publicado: (2014)

MoNetFamily: a web server to infer homologous modules and module–module interaction networks in vertebrates
por: Lin, Chun-Yu, et al.
Publicado: (2012)

SFESA: a web server for pairwise alignment refinement by secondary structure shifts
por: Tong, Jing, et al.
Publicado: (2015)

PAR-TERRA directs homologous sex chromosome pairing
por: Chu, Hsueh-Ping, et al.
Publicado: (2017)

Seq2Ref: a web server to facilitate functional interpretation
por: Li, Wenlin, et al.
Publicado: (2013)

ProSMoS server: a pattern-based search using interaction matrix representation of protein structures
por: Shi, Shuoyong, et al.
Publicado: (2009)

The COMER web server for protein analysis by homology
por: Dapkūnas, Justas, et al.
Publicado: (2022)

MISTIC: mutual information server to infer coevolution
por: Simonetti, Franco L., et al.
Publicado: (2013)

RosettaAntibody: antibody variable region homology modeling server
por: Sircar, Aroop, et al.
Publicado: (2009)

The HHpred interactive server for protein homology detection and structure prediction
por: Söding, Johannes, et al.
Publicado: (2005)

PCFamily: a web server for searching homologous protein complexes
por: Lo, Yu-Shu, et al.
Publicado: (2010)

MALISAM: a database of structurally analogous motifs in proteins
por: Cheng, Hua, et al.
Publicado: (2008)

CERNBox use cases for remote calculations on terminal servers
por: Ady, Marton
Publicado: (2021)

PROMALS3D: a tool for multiple protein sequence and structure alignments
por: Pei, Jimin, et al.
Publicado: (2008)

HangOut: generating clean PSI-BLAST profiles for domains with long insertions
por: Kim, Bong-Hyun, et al.
Publicado: (2010)

Self consistency grouping: a stringent clustering method
por: Kim, Bong-Hyun, et al.
Publicado: (2012)

Inferred Biomolecular Interaction Server—a web server to analyze and predict protein interacting partners and binding sites
por: Shoemaker, Benjamin A., et al.
Publicado: (2010)

Real Time Server Monitoring and Fixed Point Inference in FPGA
por: Paul, Debdeep
Publicado: (2019)

COGcollator: a web server for analysis of distant relationships between homologous protein families
por: Dibrova, Daria V., et al.
Publicado: (2017)

PhyloGene server for identification and visualization of co-evolving proteins using normalized phylogenetic profiles
por: Sadreyev, Ilyas R., et al.
Publicado: (2015)

Remote homology search with hidden Potts models
por: Wilburn, Grey W., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_cdtnk2i0bg5vvs7cmj11bo64hq