INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints

INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of t...

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Detalles Bibliográficos
Autores principales: Busch, Anke, Backofen, Rolf
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933236/
https://www.ncbi.nlm.nih.gov/pubmed/17452349
http://dx.doi.org/10.1093/nar/gkm218
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author Busch, Anke
Backofen, Rolf
author_facet Busch, Anke
Backofen, Rolf
author_sort Busch, Anke
collection PubMed
description INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases. The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/
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spelling pubmed-19332362007-07-31 INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints Busch, Anke Backofen, Rolf Nucleic Acids Res Articles INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases. The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/ Oxford University Press 2007-07 2007-04-22 /pmc/articles/PMC1933236/ /pubmed/17452349 http://dx.doi.org/10.1093/nar/gkm218 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Busch, Anke
Backofen, Rolf
INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title_full INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title_fullStr INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title_full_unstemmed INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title_short INFO-RNA—a server for fast inverse RNA folding satisfying sequence constraints
title_sort info-rna—a server for fast inverse rna folding satisfying sequence constraints
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933236/
https://www.ncbi.nlm.nih.gov/pubmed/17452349
http://dx.doi.org/10.1093/nar/gkm218
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