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ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ

The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from on...

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Detalles Bibliográficos
Autores principales: del Val, C., Ernst, P., Falkenhahn, M, Fladerer, C., Glatting, K. H., Suhai, S., Hotz-Wagenblatt, A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933246/
https://www.ncbi.nlm.nih.gov/pubmed/17526514
http://dx.doi.org/10.1093/nar/gkm364
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author del Val, C.
Ernst, P.
Falkenhahn, M
Fladerer, C.
Glatting, K. H.
Suhai, S.
Hotz-Wagenblatt, A.
author_facet del Val, C.
Ernst, P.
Falkenhahn, M
Fladerer, C.
Glatting, K. H.
Suhai, S.
Hotz-Wagenblatt, A.
author_sort del Val, C.
collection PubMed
description The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from one service to the next one in the right format can be very time and resource consuming, especially for non-experts. Automating this task, we present a suite of protein annotation pipelines (tasks) developed at the German Cancer Research Centre (DKFZ) oriented to protein annotation by homology (ProtSweep), by domain analysis (DomainSweep), and by secondary structure elements (2Dsweep). The aim of these tasks is to perform an exhaustive structural and functional analysis employing a wide variety of methods in combination with the most updated public databases. The three servers are available for academic users at the HUSAR open server http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/
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spelling pubmed-19332462007-07-31 ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ del Val, C. Ernst, P. Falkenhahn, M Fladerer, C. Glatting, K. H. Suhai, S. Hotz-Wagenblatt, A. Nucleic Acids Res Articles The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from one service to the next one in the right format can be very time and resource consuming, especially for non-experts. Automating this task, we present a suite of protein annotation pipelines (tasks) developed at the German Cancer Research Centre (DKFZ) oriented to protein annotation by homology (ProtSweep), by domain analysis (DomainSweep), and by secondary structure elements (2Dsweep). The aim of these tasks is to perform an exhaustive structural and functional analysis employing a wide variety of methods in combination with the most updated public databases. The three servers are available for academic users at the HUSAR open server http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/ Oxford University Press 2007-07 2007-05-25 /pmc/articles/PMC1933246/ /pubmed/17526514 http://dx.doi.org/10.1093/nar/gkm364 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
del Val, C.
Ernst, P.
Falkenhahn, M
Fladerer, C.
Glatting, K. H.
Suhai, S.
Hotz-Wagenblatt, A.
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title_full ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title_fullStr ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title_full_unstemmed ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title_short ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
title_sort protsweep, 2dsweep and domainsweep: protein analysis suite at dkfz
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933246/
https://www.ncbi.nlm.nih.gov/pubmed/17526514
http://dx.doi.org/10.1093/nar/gkm364
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