A comparative proteomics resource: proteins of Arabidopsis thaliana

Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel f...

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Detalles Bibliográficos
Autores principales: Li, Wilfred W, Quinn, Greg B, Alexandrov, Nickolai N, Bourne, Philip E, Shindyalov, Ilya N
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2003
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC193643/
https://www.ncbi.nlm.nih.gov/pubmed/12914659
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author Li, Wilfred W
Quinn, Greg B
Alexandrov, Nickolai N
Bourne, Philip E
Shindyalov, Ilya N
author_facet Li, Wilfred W
Quinn, Greg B
Alexandrov, Nickolai N
Bourne, Philip E
Shindyalov, Ilya N
author_sort Li, Wilfred W
collection PubMed
description Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web.
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spelling pubmed-1936432003-09-11 A comparative proteomics resource: proteins of Arabidopsis thaliana Li, Wilfred W Quinn, Greg B Alexandrov, Nickolai N Bourne, Philip E Shindyalov, Ilya N Genome Biol Software Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web. BioMed Central 2003 2003-07-28 /pmc/articles/PMC193643/ /pubmed/12914659 Text en Copyright © 2003 Li et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.
spellingShingle Software
Li, Wilfred W
Quinn, Greg B
Alexandrov, Nickolai N
Bourne, Philip E
Shindyalov, Ilya N
A comparative proteomics resource: proteins of Arabidopsis thaliana
title A comparative proteomics resource: proteins of Arabidopsis thaliana
title_full A comparative proteomics resource: proteins of Arabidopsis thaliana
title_fullStr A comparative proteomics resource: proteins of Arabidopsis thaliana
title_full_unstemmed A comparative proteomics resource: proteins of Arabidopsis thaliana
title_short A comparative proteomics resource: proteins of Arabidopsis thaliana
title_sort comparative proteomics resource: proteins of arabidopsis thaliana
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC193643/
https://www.ncbi.nlm.nih.gov/pubmed/12914659
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