Cargando…

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

BACKGROUND: Binding of peptides to Major Histocompatibility Complex (MHC) molecules is the single most selective step in the recognition of pathogens by the cellular immune system. The human MHC class I system (HLA-I) is extremely polymorphic. The number of registered HLA-I molecules has now surpass...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nielsen, Morten, Lundegaard, Claus, Blicher, Thomas, Lamberth, Kasper, Harndahl, Mikkel, Justesen, Sune, Røder, Gustav, Peters, Bjoern, Sette, Alessandro, Lund, Ole, Buus, Søren
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2007
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1949492/ https://www.ncbi.nlm.nih.gov/pubmed/17726526 http://dx.doi.org/10.1371/journal.pone.0000796

Ejemplares similares

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
por: Nielsen, Morten, et al.
Publicado: (2008)

Functional recombinant MHC class II molecules and high-throughput peptide-binding assays
por: Justesen, Sune, et al.
Publicado: (2009)

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
por: Lundegaard, Claus, et al.
Publicado: (2008)

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
por: Reynisson, Birkir, et al.
Publicado: (2020)

NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets
por: Nielsen, Morten, et al.
Publicado: (2016)

Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength
por: Lund, Ole, et al.
Publicado: (2011)

Correction: Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength
por: Lund, Ole, et al.
Publicado: (2011)

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
por: Peters, Bjoern, et al.
Publicado: (2006)

NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
por: Nielsen, Morten, et al.
Publicado: (2010)

HLA Class I Binding 9mer Peptides from Influenza A Virus Induce CD4(+) T Cell Responses
por: Wang, Mingjun, et al.
Publicado: (2010)

Porcine major histocompatibility complex (MHC) class I molecules and analysis of their peptide-binding specificities
por: Pedersen, Lasse Eggers, et al.
Publicado: (2011)

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
por: Larsen, Mette V, et al.
Publicado: (2007)

HIV control through a single nucleotide on the HLA-I locus
por: Kløverpris, H, et al.
Publicado: (2012)

The effect of acylation with fatty acids and other modifications on HLA class II:peptide binding and T cell stimulation for three model peptides
por: Schultz, Heidi S., et al.
Publicado: (2018)

HLA class I is most tightly linked to levels of tapasin compared with other antigen-processing proteins in glioblastoma
por: Thuring, Camilla, et al.
Publicado: (2015)

HLA class I is most tightly linked to levels of tapasin compared with other antigen-processing proteins in glioblastoma
por: Thuring, Camilla, et al.
Publicado: (2015)

One-Pot, Mix-and-Read Peptide-MHC Tetramers
por: Leisner, Christian, et al.
Publicado: (2008)

Structure of a SARS coronavirus-derived peptide bound to the human major histocompatibility complex class I molecule HLA-B*1501
por: Røder, Gustav, et al.
Publicado: (2008)

Investigation of Outbreak-Specific Nonsynonymous Mutations on Ebolavirus GP in the Context of Known Immune Reactivity
por: Vaughan, Kerrie, et al.
Publicado: (2018)

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA‐DQ2.5
por: Koşaloğlu‐Yalçın, Zeynep, et al.
Publicado: (2020)

HLA class I supertypes: a revised and updated classification
por: Sidney, John, et al.
Publicado: (2008)

Cancer Associated Aberrant Protein O-Glycosylation Can Modify Antigen Processing and Immune Response
por: Madsen, Caroline B., et al.
Publicado: (2012)

Identification and HLA-Tetramer-Validation of Human CD4(+) and CD8(+) T Cell Responses against HCMV Proteins IE1 and IE2
por: Braendstrup, Peter, et al.
Publicado: (2014)

Distinctive polymorphism at the HLA-C locus: implications for the expression of HLA-C
Publicado: (1992)

Immune epitope database analysis resource (IEDB-AR)
por: Zhang, Qing, et al.
Publicado: (2008)

RPiRLS: Quantitative Predictions of RNA Interacting with Any Protein of Known Sequence
por: Shen, Wen-Jun, et al.
Publicado: (2018)

Peptide binding predictions for HLA DR, DP and DQ molecules
por: Wang, Peng, et al.
Publicado: (2010)

Fine mapping of the HLA locus in Parkinson’s disease in Europeans
por: Yu, Eric, et al.
Publicado: (2021)

Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes
por: Paul, Sinu, et al.
Publicado: (2017)

HLA class I-drug-T-cell receptor interactions in SJS/TEN
por: Rive, Craig, et al.
Publicado: (2014)

A rapid method to screen putative mRNA targets of any known microRNA
por: Huang, Yujing, et al.
Publicado: (2011)

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
por: Kim, Yohan, et al.
Publicado: (2014)

Impact of peptide:HLA complex stability for the identification of SARS-CoV-2-specific CD8(+)T cells
por: Lie-Andersen, Olivia, et al.
Publicado: (2023)

Deep-Sea Octopus (Graneledone boreopacifica) Conducts the Longest-Known Egg-Brooding Period of Any Animal
por: Robison, Bruce, et al.
Publicado: (2014)

The Application of Electromagnetic Sensors for Determination of Cherenkov Cone Inside and in the Vicinity of the Detector Volume in Any Environment Known
por: Savu, Valeriu, et al.
Publicado: (2021)

Predicting HLA CD4 Immunogenicity in Human Populations
por: Dhanda, Sandeep Kumar, et al.
Publicado: (2018)

Of mice and humans: how good are HLA transgenic mice as a model of human immune responses?
por: Kotturi, Maya F, et al.
Publicado: (2009)

Identification of CD8(+) T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL
por: Larsen, Mette Voldby, et al.
Publicado: (2010)

Pre-existing immunity to SARS-CoV-2: the knowns and unknowns
por: Sette, Alessandro, et al.
Publicado: (2020)

Loss of polymorphic A and B locus HLA antigens in colon carcinoma.
por: Rees, R. C., et al.
Publicado: (1988)

Cannot write session to /tmp/vufind_sessions/sess_fpt3gq6odnmdpdc1d5buupgqi3