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ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature

BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESC...

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Detalles Bibliográficos
Autores principales: McDonald, Andrew G, Boyce, Sinéad, Moss, Gerard P, Dixon, Henry BF, Tipton, Keith F
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978204/
https://www.ncbi.nlm.nih.gov/pubmed/17662133
http://dx.doi.org/10.1186/1471-2091-8-14
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author McDonald, Andrew G
Boyce, Sinéad
Moss, Gerard P
Dixon, Henry BF
Tipton, Keith F
author_facet McDonald, Andrew G
Boyce, Sinéad
Moss, Gerard P
Dixon, Henry BF
Tipton, Keith F
author_sort McDonald, Andrew G
collection PubMed
description BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESCRIPTION: The data, which are stored in a MySQL database, preserve the formatting of chemical and enzyme names. A simple, easy to use, web-based query interface is provided, along with an advanced search engine for more complex queries. The database is publicly available at . The data are available for download as SQL and XML files via FTP. CONCLUSION: ExplorEnz has powerful and flexible search capabilities and provides the scientific community with the most up-to-date version of the IUBMB Enzyme List.
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spelling pubmed-19782042007-09-18 ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature McDonald, Andrew G Boyce, Sinéad Moss, Gerard P Dixon, Henry BF Tipton, Keith F BMC Biochem Database BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESCRIPTION: The data, which are stored in a MySQL database, preserve the formatting of chemical and enzyme names. A simple, easy to use, web-based query interface is provided, along with an advanced search engine for more complex queries. The database is publicly available at . The data are available for download as SQL and XML files via FTP. CONCLUSION: ExplorEnz has powerful and flexible search capabilities and provides the scientific community with the most up-to-date version of the IUBMB Enzyme List. BioMed Central 2007-07-27 /pmc/articles/PMC1978204/ /pubmed/17662133 http://dx.doi.org/10.1186/1471-2091-8-14 Text en Copyright © 2007 McDonald et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database
McDonald, Andrew G
Boyce, Sinéad
Moss, Gerard P
Dixon, Henry BF
Tipton, Keith F
ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title_full ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title_fullStr ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title_full_unstemmed ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title_short ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
title_sort explorenz: a mysql database of the iubmb enzyme nomenclature
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978204/
https://www.ncbi.nlm.nih.gov/pubmed/17662133
http://dx.doi.org/10.1186/1471-2091-8-14
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