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ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature
BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESC...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978204/ https://www.ncbi.nlm.nih.gov/pubmed/17662133 http://dx.doi.org/10.1186/1471-2091-8-14 |
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author | McDonald, Andrew G Boyce, Sinéad Moss, Gerard P Dixon, Henry BF Tipton, Keith F |
author_facet | McDonald, Andrew G Boyce, Sinéad Moss, Gerard P Dixon, Henry BF Tipton, Keith F |
author_sort | McDonald, Andrew G |
collection | PubMed |
description | BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESCRIPTION: The data, which are stored in a MySQL database, preserve the formatting of chemical and enzyme names. A simple, easy to use, web-based query interface is provided, along with an advanced search engine for more complex queries. The database is publicly available at . The data are available for download as SQL and XML files via FTP. CONCLUSION: ExplorEnz has powerful and flexible search capabilities and provides the scientific community with the most up-to-date version of the IUBMB Enzyme List. |
format | Text |
id | pubmed-1978204 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-19782042007-09-18 ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature McDonald, Andrew G Boyce, Sinéad Moss, Gerard P Dixon, Henry BF Tipton, Keith F BMC Biochem Database BACKGROUND: We describe the database ExplorEnz, which is the primary repository for EC numbers and enzyme data that are being curated on behalf of the IUBMB. The enzyme nomenclature is incorporated into many other resources, including the ExPASy-ENZYME, BRENDA and KEGG bioinformatics databases. DESCRIPTION: The data, which are stored in a MySQL database, preserve the formatting of chemical and enzyme names. A simple, easy to use, web-based query interface is provided, along with an advanced search engine for more complex queries. The database is publicly available at . The data are available for download as SQL and XML files via FTP. CONCLUSION: ExplorEnz has powerful and flexible search capabilities and provides the scientific community with the most up-to-date version of the IUBMB Enzyme List. BioMed Central 2007-07-27 /pmc/articles/PMC1978204/ /pubmed/17662133 http://dx.doi.org/10.1186/1471-2091-8-14 Text en Copyright © 2007 McDonald et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database McDonald, Andrew G Boyce, Sinéad Moss, Gerard P Dixon, Henry BF Tipton, Keith F ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title | ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title_full | ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title_fullStr | ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title_full_unstemmed | ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title_short | ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature |
title_sort | explorenz: a mysql database of the iubmb enzyme nomenclature |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978204/ https://www.ncbi.nlm.nih.gov/pubmed/17662133 http://dx.doi.org/10.1186/1471-2091-8-14 |
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