Cargando…

Prediction of the burial status of transmembrane residues of helical membrane proteins

BACKGROUND: Helical membrane proteins (HMPs) play a crucial role in diverse cellular processes, yet it still remains extremely difficult to determine their structures by experimental techniques. Given this situation, it is highly desirable to develop sequence-based computational methods for predicti...

Descripción completa

Detalles Bibliográficos
Autores principales:	Park, Yungki, Hayat, Sikander, Helms, Volkhard
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2000914/ https://www.ncbi.nlm.nih.gov/pubmed/17708758 http://dx.doi.org/10.1186/1471-2105-8-302

Ejemplares similares

Prediction of transmembrane helix orientation in polytopic membrane proteins
por: Adamian, Larisa, et al.
Publicado: (2006)

Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions
por: Hayat, Sikander, et al.
Publicado: (2012)

Improving prediction of burial state of residues by exploiting correlation among residues
por: Gong, Hai’e, et al.
Publicado: (2017)

Roughness of Transmembrane Helices Reduces Lipid Membrane Dynamics
por: Olšinová, Marie, et al.
Publicado: (2018)

Transmembrane α helices
por: Mall, Sanjay, et al.
Publicado: (2002)

RHYTHM—a server to predict the orientation of transmembrane helices in channels and membrane-coils
por: Rose, Alexander, et al.
Publicado: (2009)

AllesTM: predicting multiple structural features of transmembrane proteins
por: Hönigschmid, Peter, et al.
Publicado: (2020)

MetaTM - a consensus method for transmembrane protein topology prediction
por: Klammer, Martin, et al.
Publicado: (2009)

The role of charged residues in the transmembrane helices of monocarboxylate transporter 1 and its ancillary protein basigin in determining plasma membrane expression and catalytic activity
por: Manoharan, Christine, et al.
Publicado: (2006)

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices
por: Shen, Hongbin, et al.
Publicado: (2008)

Improving the topology prediction of α-helical transmembrane proteins with deep transfer learning
por: Wang, Lei, et al.
Publicado: (2022)

Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins
por: Tran, Van Du, et al.
Publicado: (2009)

HMM_RA: An Improved Method for Alpha-Helical Transmembrane Protein Topology Prediction
por: Hu, Jing, et al.
Publicado: (2008)

Membrane Environment Modulates the pK(a) Values of Transmembrane Helices
por: Panahi, Afra, et al.
Publicado: (2015)

Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins
por: Wong, Wing-Cheong, et al.
Publicado: (2011)

Transmembrane Helices 2 and 3 Determine the Localization of Plasma Membrane Intrinsic Proteins in Eukaryotic Cells
por: Wang, Hao, et al.
Publicado: (2020)

TIM23-mediated insertion of transmembrane α-helices into the mitochondrial inner membrane
por: Botelho, Salomé Calado, et al.
Publicado: (2011)

Topography Prediction of Helical Transmembrane Proteins by a New Modification of the Sliding Window Method
por: Simakova, Maria N., et al.
Publicado: (2014)

Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach
por: Casciari, D, et al.
Publicado: (2006)

Folding and Insertion of Transmembrane Helices at the ER
por: Whitley, Paul, et al.
Publicado: (2021)

Chaperoning transmembrane helices in the lipid bilayer
por: Zhang, Qi, et al.
Publicado: (2020)

Protein structure based prediction of catalytic residues
por: Fajardo, J Eduardo, et al.
Publicado: (2013)

Amyloid-like Fibrils from an α-Helical Transmembrane Protein
por: Stroobants, Karen, et al.
Publicado: (2017)

TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures
por: Dobson, Laszlo, et al.
Publicado: (2022)

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences
por: Park, Yungki
Publicado: (2009)

Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices
por: Lai, Jhih-Siang, et al.
Publicado: (2013)

Improving AlphaFold predicted contacts inalpha-helical transmembrane proteins structuresusing structural features
por: Sawhney, Aman, et al.
Publicado: (2023)

Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction
por: Liu, Jiale, et al.
Publicado: (2019)

A photoswitchable helical peptide with light-controllable interface/transmembrane topology in lipidic membranes
por: Gutiérrez-Salazar, Mónica, et al.
Publicado: (2021)

Improved sequence-based prediction of interaction sites in α-helical transmembrane proteins by deep learning
por: Sun, Jianfeng, et al.
Publicado: (2021)

Transmembrane helical interactions in the CFTR channel pore
por: Das, Jhuma, et al.
Publicado: (2017)

ER membrane protein complex is required for the insertions of late-synthesized transmembrane helices of Rh1 in Drosophila photoreceptors
por: Hiramatsu, Naoki, et al.
Publicado: (2019)

Proline residues of transmembrane domains determine the sorting of inner membrane proteins in mitochondria
por: Meier, Stephan, et al.
Publicado: (2005)

Corrigendum to “Topography Prediction of Helical Transmembrane Proteins by a New Modification of the Sliding Window Method”
por: Simakova, Maria N., et al.
Publicado: (2017)

Approaches to ab initio molecular replacement of α-helical transmembrane proteins
por: Thomas, Jens M. H., et al.
Publicado: (2017)

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
por: Bagos, Pantelis G, et al.
Publicado: (2006)

A new in-silico method for determination of helical transmembrane domains based on the PepLook scan: application to IL-2Rβ and IL-2Rγc receptor chains
por: Charlois, Yan, et al.
Publicado: (2011)

A Combination of Compositional Index and Genetic Algorithm for Predicting Transmembrane Helical Segments
por: Zaki, Nazar, et al.
Publicado: (2011)

Conformational Changes in Talin on Binding to Anionic Phospholipid Membranes Facilitate Signaling by Integrin Transmembrane Helices
por: Kalli, Antreas C., et al.
Publicado: (2013)

MeMotif: a database of linear motifs in α-helical transmembrane proteins
por: Marsico, Annalisa, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_rbd9bgjn1gi5bgtnrjfs39sl62