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Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective d...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001201/ https://www.ncbi.nlm.nih.gov/pubmed/17760972 http://dx.doi.org/10.1186/1471-2105-8-320 |
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author | Klee, Kathrin Ernst, Rebecca Spannagl, Manuel Mayer, Klaus FX |
author_facet | Klee, Kathrin Ernst, Rebecca Spannagl, Manuel Mayer, Klaus FX |
author_sort | Klee, Kathrin |
collection | PubMed |
description | BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective database. This non-direct database upload is laborious and evokes problems of data synchronicity. RESULTS: To overcome these limitations we extended the Apollo data adapter with a generic, configurable web service client that is able to retrieve annotation data in a GAME-XML-formatted string and pass it on to Apollo's internal input routine. CONCLUSION: This Apollo web service adapter, Apollo2Go, simplifies the data exchange in distributed projects and aims to render the annotation process more comfortable. The Apollo2Go software is freely available from . |
format | Text |
id | pubmed-2001201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-20012012007-10-06 Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation Klee, Kathrin Ernst, Rebecca Spannagl, Manuel Mayer, Klaus FX BMC Bioinformatics Software BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective database. This non-direct database upload is laborious and evokes problems of data synchronicity. RESULTS: To overcome these limitations we extended the Apollo data adapter with a generic, configurable web service client that is able to retrieve annotation data in a GAME-XML-formatted string and pass it on to Apollo's internal input routine. CONCLUSION: This Apollo web service adapter, Apollo2Go, simplifies the data exchange in distributed projects and aims to render the annotation process more comfortable. The Apollo2Go software is freely available from . BioMed Central 2007-08-30 /pmc/articles/PMC2001201/ /pubmed/17760972 http://dx.doi.org/10.1186/1471-2105-8-320 Text en Copyright © 2007 Klee et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Klee, Kathrin Ernst, Rebecca Spannagl, Manuel Mayer, Klaus FX Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title | Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title_full | Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title_fullStr | Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title_full_unstemmed | Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title_short | Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation |
title_sort | apollo2go: a web service adapter for the apollo genome viewer to enable distributed genome annotation |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001201/ https://www.ncbi.nlm.nih.gov/pubmed/17760972 http://dx.doi.org/10.1186/1471-2105-8-320 |
work_keys_str_mv | AT kleekathrin apollo2goawebserviceadapterfortheapollogenomeviewertoenabledistributedgenomeannotation AT ernstrebecca apollo2goawebserviceadapterfortheapollogenomeviewertoenabledistributedgenomeannotation AT spannaglmanuel apollo2goawebserviceadapterfortheapollogenomeviewertoenabledistributedgenomeannotation AT mayerklausfx apollo2goawebserviceadapterfortheapollogenomeviewertoenabledistributedgenomeannotation |