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Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation

BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective d...

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Detalles Bibliográficos
Autores principales: Klee, Kathrin, Ernst, Rebecca, Spannagl, Manuel, Mayer, Klaus FX
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001201/
https://www.ncbi.nlm.nih.gov/pubmed/17760972
http://dx.doi.org/10.1186/1471-2105-8-320
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author Klee, Kathrin
Ernst, Rebecca
Spannagl, Manuel
Mayer, Klaus FX
author_facet Klee, Kathrin
Ernst, Rebecca
Spannagl, Manuel
Mayer, Klaus FX
author_sort Klee, Kathrin
collection PubMed
description BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective database. This non-direct database upload is laborious and evokes problems of data synchronicity. RESULTS: To overcome these limitations we extended the Apollo data adapter with a generic, configurable web service client that is able to retrieve annotation data in a GAME-XML-formatted string and pass it on to Apollo's internal input routine. CONCLUSION: This Apollo web service adapter, Apollo2Go, simplifies the data exchange in distributed projects and aims to render the annotation process more comfortable. The Apollo2Go software is freely available from .
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spelling pubmed-20012012007-10-06 Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation Klee, Kathrin Ernst, Rebecca Spannagl, Manuel Mayer, Klaus FX BMC Bioinformatics Software BACKGROUND: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective database. This non-direct database upload is laborious and evokes problems of data synchronicity. RESULTS: To overcome these limitations we extended the Apollo data adapter with a generic, configurable web service client that is able to retrieve annotation data in a GAME-XML-formatted string and pass it on to Apollo's internal input routine. CONCLUSION: This Apollo web service adapter, Apollo2Go, simplifies the data exchange in distributed projects and aims to render the annotation process more comfortable. The Apollo2Go software is freely available from . BioMed Central 2007-08-30 /pmc/articles/PMC2001201/ /pubmed/17760972 http://dx.doi.org/10.1186/1471-2105-8-320 Text en Copyright © 2007 Klee et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Klee, Kathrin
Ernst, Rebecca
Spannagl, Manuel
Mayer, Klaus FX
Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title_full Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title_fullStr Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title_full_unstemmed Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title_short Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
title_sort apollo2go: a web service adapter for the apollo genome viewer to enable distributed genome annotation
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001201/
https://www.ncbi.nlm.nih.gov/pubmed/17760972
http://dx.doi.org/10.1186/1471-2105-8-320
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