Cargando…

Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray

BACKGROUND: Recent studies revealed that many mammalian protein-coding genes also transcribe their complementary strands. This phenomenon raises questions regarding the validity of data obtained from double-stranded cDNA microarrays since hybridization to both strands may occur. Here, we wanted to a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2007
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2020490/ https://www.ncbi.nlm.nih.gov/pubmed/17727707 http://dx.doi.org/10.1186/1471-2164-8-295

Ejemplares similares

Molecular characteristics of breast tumors in patients screened for germline predisposition from a population-based observational study
por: Nacer, Deborah F., et al.
Publicado: (2023)

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data
por: Saal, Lao H, et al.
Publicado: (2002)

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
por: Staaf, Johan, et al.
Publicado: (2008)

Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns
por: Holm, Karolina, et al.
Publicado: (2010)

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
por: Staaf, Johan, et al.
Publicado: (2008)

The HER2-Encoded miR-4728-3p Regulates ESR1 through a Non-Canonical Internal Seed Interaction
por: Newie, Inga, et al.
Publicado: (2014)

Frequent miRNA-convergent fusion gene events in breast cancer
por: Persson, Helena, et al.
Publicado: (2017)

Normalization of array-CGH data: influence of copy number imbalances
por: Staaf, Johan, et al.
Publicado: (2007)

Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
por: Bengtsson, Henrik, et al.
Publicado: (2004)

Performance of gene expression–based single sample predictors for assessment of clinicopathological subgroups and molecular subtypes in cancers: a case comparison study in non-small cell lung cancer
por: Cirenajwis, Helena, et al.
Publicado: (2019)

Correction to: Molecular analyses of triple-negative breast cancer in the young and elderly
por: Aine, Mattias, et al.
Publicado: (2021)

Molecular analyses of triple-negative breast cancer in the young and elderly
por: Aine, Mattias, et al.
Publicado: (2021)

Perturbation and stability of PAM50 subtyping in population-based primary invasive breast cancer
por: Veerla, Srinivas, et al.
Publicado: (2023)

BASE - 2nd generation software for microarray data management and analysis
por: Vallon-Christersson, Johan, et al.
Publicado: (2009)

An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells
por: Holm, Karolina, et al.
Publicado: (2016)

High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer
por: Staaf, Johan, et al.
Publicado: (2010)

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
por: Numata, Koji, et al.
Publicado: (2009)

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers
por: Glodzik, Dominik, et al.
Publicado: (2020)

Methylation Patterns and Chromatin Accessibility in Neuroendocrine Lung Cancer
por: Arbajian, Elsa, et al.
Publicado: (2020)

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series
por: Vallon-Christersson, Johan, et al.
Publicado: (2019)

Whole-genome-sequencing of triple negative breast cancers in a population-based clinical study
por: Staaf, Johan, et al.
Publicado: (2019)

Tasquinimod (ABR-215050), a quinoline-3-carboxamide anti-angiogenic agent, modulates the expression of thrombospondin-1 in human prostate tumors
por: Olsson, Anders, et al.
Publicado: (2010)

Dataset of natural antisense transcripts in P. vivax clinical isolates derived using custom designed strand-specific microarray
por: Boopathi, P.A., et al.
Publicado: (2014)

MASQOT: a method for cDNA microarray spot quality control
por: Bylesjö, Max, et al.
Publicado: (2005)

Regulatory networks and 5′ partner usage of miRNA host gene fusions in breast cancer
por: Hafstað, Völundur, et al.
Publicado: (2022)

Technical Analysis of cDNA Microarrays
por: Scott, Cinda P., et al.
Publicado: (2009)

High expression of ZNF703 independent of amplification indicates worse prognosis in patients with luminal B breast cancer
por: Reynisdottir, Inga, et al.
Publicado: (2013)

Serum copper, zinc and copper/zinc ratio in relation to survival after breast cancer diagnosis: A prospective multicenter cohort study
por: Bengtsson, Ylva, et al.
Publicado: (2023)

Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer
por: Staaf, Johan, et al.
Publicado: (2011)

GOBO: Gene Expression-Based Outcome for Breast Cancer Online
por: Ringnér, Markus, et al.
Publicado: (2011)

Association between breast cancer risk and disease aggressiveness: Characterizing underlying gene expression patterns
por: Ugalde‐Morales, Emilio, et al.
Publicado: (2020)

Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays
por: Wadenbäck, Johan, et al.
Publicado: (2005)

An adaptive method for cDNA microarray normalization
por: Zhao, Yingdong, et al.
Publicado: (2005)

Genome-wide estimation of transcript concentrations from spotted cDNA microarray data
por: Frigessi, Arnoldo, et al.
Publicado: (2005)

Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration
por: Monaghan, James R, et al.
Publicado: (2009)

Identification of Schistosoma mansoni gender-associated gene transcripts by cDNA microarray profiling
por: Hoffmann, Karl F, et al.
Publicado: (2002)

Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative
por: Brueffer, Christian, et al.
Publicado: (2018)

Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
por: Jen, Chih-Hung, et al.
Publicado: (2005)

Protein Abundance Control by Non-coding Antisense Transcription
por: Huber, Florian, et al.
Publicado: (2016)

Natural Antisense Transcript: A Concomitant Engagement with Protein-Coding Transcript
por: Li, Keguo, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_c0dv433cqgr25bf6b0ruu0hvuo