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A novel approach to detect hot-spots in large-scale multivariate data
BACKGROUND: Progressive advances in the measurement of complex multifactorial components of biological processes involving both spatial and temporal domains have made it difficult to identify the variables (genes, proteins, neurons etc.) significantly changed activities in response to a stimulus wit...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045117/ https://www.ncbi.nlm.nih.gov/pubmed/17848185 http://dx.doi.org/10.1186/1471-2105-8-331 |
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author | Wu, Jianhua Kendrick, Keith M Feng, Jianfeng |
author_facet | Wu, Jianhua Kendrick, Keith M Feng, Jianfeng |
author_sort | Wu, Jianhua |
collection | PubMed |
description | BACKGROUND: Progressive advances in the measurement of complex multifactorial components of biological processes involving both spatial and temporal domains have made it difficult to identify the variables (genes, proteins, neurons etc.) significantly changed activities in response to a stimulus within large data sets using conventional statistical approaches. The set of all changed variables is termed hot-spots. The detection of such hot spots is considered to be an NP hard problem, but by first establishing its theoretical foundation we have been able to develop an algorithm that provides a solution. RESULTS: Our results show that a first-order phase transition is observable whose critical point separates the hot-spot set from the remaining variables. Its application is also found to be more successful than existing approaches in identifying statistically significant hot-spots both with simulated data sets and in real large-scale multivariate data sets from gene arrays, electrophysiological recording and functional magnetic resonance imaging experiments. CONCLUSION: In summary, this new statistical algorithm should provide a powerful new analytical tool to extract the maximum information from complex biological multivariate data. |
format | Text |
id | pubmed-2045117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-20451172007-10-31 A novel approach to detect hot-spots in large-scale multivariate data Wu, Jianhua Kendrick, Keith M Feng, Jianfeng BMC Bioinformatics Methodology Article BACKGROUND: Progressive advances in the measurement of complex multifactorial components of biological processes involving both spatial and temporal domains have made it difficult to identify the variables (genes, proteins, neurons etc.) significantly changed activities in response to a stimulus within large data sets using conventional statistical approaches. The set of all changed variables is termed hot-spots. The detection of such hot spots is considered to be an NP hard problem, but by first establishing its theoretical foundation we have been able to develop an algorithm that provides a solution. RESULTS: Our results show that a first-order phase transition is observable whose critical point separates the hot-spot set from the remaining variables. Its application is also found to be more successful than existing approaches in identifying statistically significant hot-spots both with simulated data sets and in real large-scale multivariate data sets from gene arrays, electrophysiological recording and functional magnetic resonance imaging experiments. CONCLUSION: In summary, this new statistical algorithm should provide a powerful new analytical tool to extract the maximum information from complex biological multivariate data. BioMed Central 2007-09-11 /pmc/articles/PMC2045117/ /pubmed/17848185 http://dx.doi.org/10.1186/1471-2105-8-331 Text en Copyright © 2007 Wu et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methodology Article Wu, Jianhua Kendrick, Keith M Feng, Jianfeng A novel approach to detect hot-spots in large-scale multivariate data |
title | A novel approach to detect hot-spots in large-scale multivariate data |
title_full | A novel approach to detect hot-spots in large-scale multivariate data |
title_fullStr | A novel approach to detect hot-spots in large-scale multivariate data |
title_full_unstemmed | A novel approach to detect hot-spots in large-scale multivariate data |
title_short | A novel approach to detect hot-spots in large-scale multivariate data |
title_sort | novel approach to detect hot-spots in large-scale multivariate data |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045117/ https://www.ncbi.nlm.nih.gov/pubmed/17848185 http://dx.doi.org/10.1186/1471-2105-8-331 |
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