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A High-Density Admixture Scan in 1,670 African Americans with Hypertension

Hypertension (HTN) is a devastating disease with a higher incidence in African Americans than European Americans, inspiring searches for genetic variants that contribute to this difference. We report the results of a large-scale admixture scan for genes contributing HTN risk, in which we screened 1,...

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Autores principales: Deo, Rahul C, Patterson, Nick, Tandon, Arti, McDonald, Gavin J, Haiman, Christopher A, Ardlie, Kristin, Henderson, Brian E, Henderson, Sean O, Reich, David
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2077893/
https://www.ncbi.nlm.nih.gov/pubmed/18020707
http://dx.doi.org/10.1371/journal.pgen.0030196
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author Deo, Rahul C
Patterson, Nick
Tandon, Arti
McDonald, Gavin J
Haiman, Christopher A
Ardlie, Kristin
Henderson, Brian E
Henderson, Sean O
Reich, David
author_facet Deo, Rahul C
Patterson, Nick
Tandon, Arti
McDonald, Gavin J
Haiman, Christopher A
Ardlie, Kristin
Henderson, Brian E
Henderson, Sean O
Reich, David
author_sort Deo, Rahul C
collection PubMed
description Hypertension (HTN) is a devastating disease with a higher incidence in African Americans than European Americans, inspiring searches for genetic variants that contribute to this difference. We report the results of a large-scale admixture scan for genes contributing HTN risk, in which we screened 1,670 African Americans with HTN and 387 control individuals for regions of the genome with elevated proportion of African or European ancestry. No loci were identified that were significantly associated with HTN. We also searched for evidence of an admixture signal at 40 candidate genes and eight previously reported linkage peaks, but none appears to contribute substantially to the differential HTN risk between African and European Americans. Finally, we observed nominal association at one of the loci detected in the admixture scan of Zhu et al. 2005 (p = 0.016 at 6q24.3 correcting for four hypotheses tested), although we caution that the significance is marginal and the estimated odds ratio of 1.19 per African allele is less than what would be expected from the original report; thus, further work is needed to follow up this locus.
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spelling pubmed-20778932007-11-29 A High-Density Admixture Scan in 1,670 African Americans with Hypertension Deo, Rahul C Patterson, Nick Tandon, Arti McDonald, Gavin J Haiman, Christopher A Ardlie, Kristin Henderson, Brian E Henderson, Sean O Reich, David PLoS Genet Research Article Hypertension (HTN) is a devastating disease with a higher incidence in African Americans than European Americans, inspiring searches for genetic variants that contribute to this difference. We report the results of a large-scale admixture scan for genes contributing HTN risk, in which we screened 1,670 African Americans with HTN and 387 control individuals for regions of the genome with elevated proportion of African or European ancestry. No loci were identified that were significantly associated with HTN. We also searched for evidence of an admixture signal at 40 candidate genes and eight previously reported linkage peaks, but none appears to contribute substantially to the differential HTN risk between African and European Americans. Finally, we observed nominal association at one of the loci detected in the admixture scan of Zhu et al. 2005 (p = 0.016 at 6q24.3 correcting for four hypotheses tested), although we caution that the significance is marginal and the estimated odds ratio of 1.19 per African allele is less than what would be expected from the original report; thus, further work is needed to follow up this locus. Public Library of Science 2007-11 2007-11-16 /pmc/articles/PMC2077893/ /pubmed/18020707 http://dx.doi.org/10.1371/journal.pgen.0030196 Text en © 2007 Deo et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Deo, Rahul C
Patterson, Nick
Tandon, Arti
McDonald, Gavin J
Haiman, Christopher A
Ardlie, Kristin
Henderson, Brian E
Henderson, Sean O
Reich, David
A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title_full A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title_fullStr A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title_full_unstemmed A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title_short A High-Density Admixture Scan in 1,670 African Americans with Hypertension
title_sort high-density admixture scan in 1,670 african americans with hypertension
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2077893/
https://www.ncbi.nlm.nih.gov/pubmed/18020707
http://dx.doi.org/10.1371/journal.pgen.0030196
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