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Automatic delineation of malignancy in histopathological head and neck slides

BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, i...

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Autores principales: Mete, Mutlu, Xu, Xiaowei, Fan, Chun-Yang, Shafirstein, Gal
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099485/
https://www.ncbi.nlm.nih.gov/pubmed/18047716
http://dx.doi.org/10.1186/1471-2105-8-S7-S17
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author Mete, Mutlu
Xu, Xiaowei
Fan, Chun-Yang
Shafirstein, Gal
author_facet Mete, Mutlu
Xu, Xiaowei
Fan, Chun-Yang
Shafirstein, Gal
author_sort Mete, Mutlu
collection PubMed
description BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, improvements in imaging technologies in terms of histological image analysis led to the discovery of virtual histological slides. In this technique, a computerized microscope scans a glass slide and generates virtual slides at a resolution of 0.25 μm/pixel. As the recognition of intrinsic cancer areas is time consuming and error prone, in this study we develop a novel method to tackle automatic squamous cell carcinoma of the head and neck detection problem in high-resolution, wholly-scanned histopathological slides. RESULTS: A density-based clustering algorithm improved for this study plays a key role in the determination of the corrupted cell nuclei. Using the Support Vector Machines (SVMs) Classifier, experimental results on seven head and neck slides show that the proposed algorithm performs well, obtaining an average of 96% classification accuracy. CONCLUSION: Recent advances in imaging technology enable us to investigate cancer tissue at cellular level. In this study we focus on wholly-scanned histopathological slides of head and neck tissues. In the context of computer-aided diagnosis, delineation of malignant regions is achieved using a powerful classification algorithm, which heavily depends on the features extracted by aid of a newly proposed cell nuclei clustering technique. The preliminary experimental results demonstrate a high accuracy of the proposed method.
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spelling pubmed-20994852007-12-03 Automatic delineation of malignancy in histopathological head and neck slides Mete, Mutlu Xu, Xiaowei Fan, Chun-Yang Shafirstein, Gal BMC Bioinformatics Proceedings BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, improvements in imaging technologies in terms of histological image analysis led to the discovery of virtual histological slides. In this technique, a computerized microscope scans a glass slide and generates virtual slides at a resolution of 0.25 μm/pixel. As the recognition of intrinsic cancer areas is time consuming and error prone, in this study we develop a novel method to tackle automatic squamous cell carcinoma of the head and neck detection problem in high-resolution, wholly-scanned histopathological slides. RESULTS: A density-based clustering algorithm improved for this study plays a key role in the determination of the corrupted cell nuclei. Using the Support Vector Machines (SVMs) Classifier, experimental results on seven head and neck slides show that the proposed algorithm performs well, obtaining an average of 96% classification accuracy. CONCLUSION: Recent advances in imaging technology enable us to investigate cancer tissue at cellular level. In this study we focus on wholly-scanned histopathological slides of head and neck tissues. In the context of computer-aided diagnosis, delineation of malignant regions is achieved using a powerful classification algorithm, which heavily depends on the features extracted by aid of a newly proposed cell nuclei clustering technique. The preliminary experimental results demonstrate a high accuracy of the proposed method. BioMed Central 2007-11-01 /pmc/articles/PMC2099485/ /pubmed/18047716 http://dx.doi.org/10.1186/1471-2105-8-S7-S17 Text en Copyright © 2007 Mete et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Mete, Mutlu
Xu, Xiaowei
Fan, Chun-Yang
Shafirstein, Gal
Automatic delineation of malignancy in histopathological head and neck slides
title Automatic delineation of malignancy in histopathological head and neck slides
title_full Automatic delineation of malignancy in histopathological head and neck slides
title_fullStr Automatic delineation of malignancy in histopathological head and neck slides
title_full_unstemmed Automatic delineation of malignancy in histopathological head and neck slides
title_short Automatic delineation of malignancy in histopathological head and neck slides
title_sort automatic delineation of malignancy in histopathological head and neck slides
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099485/
https://www.ncbi.nlm.nih.gov/pubmed/18047716
http://dx.doi.org/10.1186/1471-2105-8-S7-S17
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