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Automatic delineation of malignancy in histopathological head and neck slides
BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, i...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099485/ https://www.ncbi.nlm.nih.gov/pubmed/18047716 http://dx.doi.org/10.1186/1471-2105-8-S7-S17 |
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author | Mete, Mutlu Xu, Xiaowei Fan, Chun-Yang Shafirstein, Gal |
author_facet | Mete, Mutlu Xu, Xiaowei Fan, Chun-Yang Shafirstein, Gal |
author_sort | Mete, Mutlu |
collection | PubMed |
description | BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, improvements in imaging technologies in terms of histological image analysis led to the discovery of virtual histological slides. In this technique, a computerized microscope scans a glass slide and generates virtual slides at a resolution of 0.25 μm/pixel. As the recognition of intrinsic cancer areas is time consuming and error prone, in this study we develop a novel method to tackle automatic squamous cell carcinoma of the head and neck detection problem in high-resolution, wholly-scanned histopathological slides. RESULTS: A density-based clustering algorithm improved for this study plays a key role in the determination of the corrupted cell nuclei. Using the Support Vector Machines (SVMs) Classifier, experimental results on seven head and neck slides show that the proposed algorithm performs well, obtaining an average of 96% classification accuracy. CONCLUSION: Recent advances in imaging technology enable us to investigate cancer tissue at cellular level. In this study we focus on wholly-scanned histopathological slides of head and neck tissues. In the context of computer-aided diagnosis, delineation of malignant regions is achieved using a powerful classification algorithm, which heavily depends on the features extracted by aid of a newly proposed cell nuclei clustering technique. The preliminary experimental results demonstrate a high accuracy of the proposed method. |
format | Text |
id | pubmed-2099485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-20994852007-12-03 Automatic delineation of malignancy in histopathological head and neck slides Mete, Mutlu Xu, Xiaowei Fan, Chun-Yang Shafirstein, Gal BMC Bioinformatics Proceedings BACKGROUND: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histopathologists review the histological slides acquired from biopsy specimen in order to outline malignant areas. Recently, improvements in imaging technologies in terms of histological image analysis led to the discovery of virtual histological slides. In this technique, a computerized microscope scans a glass slide and generates virtual slides at a resolution of 0.25 μm/pixel. As the recognition of intrinsic cancer areas is time consuming and error prone, in this study we develop a novel method to tackle automatic squamous cell carcinoma of the head and neck detection problem in high-resolution, wholly-scanned histopathological slides. RESULTS: A density-based clustering algorithm improved for this study plays a key role in the determination of the corrupted cell nuclei. Using the Support Vector Machines (SVMs) Classifier, experimental results on seven head and neck slides show that the proposed algorithm performs well, obtaining an average of 96% classification accuracy. CONCLUSION: Recent advances in imaging technology enable us to investigate cancer tissue at cellular level. In this study we focus on wholly-scanned histopathological slides of head and neck tissues. In the context of computer-aided diagnosis, delineation of malignant regions is achieved using a powerful classification algorithm, which heavily depends on the features extracted by aid of a newly proposed cell nuclei clustering technique. The preliminary experimental results demonstrate a high accuracy of the proposed method. BioMed Central 2007-11-01 /pmc/articles/PMC2099485/ /pubmed/18047716 http://dx.doi.org/10.1186/1471-2105-8-S7-S17 Text en Copyright © 2007 Mete et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Proceedings Mete, Mutlu Xu, Xiaowei Fan, Chun-Yang Shafirstein, Gal Automatic delineation of malignancy in histopathological head and neck slides |
title | Automatic delineation of malignancy in histopathological head and neck slides |
title_full | Automatic delineation of malignancy in histopathological head and neck slides |
title_fullStr | Automatic delineation of malignancy in histopathological head and neck slides |
title_full_unstemmed | Automatic delineation of malignancy in histopathological head and neck slides |
title_short | Automatic delineation of malignancy in histopathological head and neck slides |
title_sort | automatic delineation of malignancy in histopathological head and neck slides |
topic | Proceedings |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099485/ https://www.ncbi.nlm.nih.gov/pubmed/18047716 http://dx.doi.org/10.1186/1471-2105-8-S7-S17 |
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