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Webtag: a new web tool providing tags/anchors for RT-PCR experiments with prokaryotes
BACKGROUND: Webtag is a tool providing oligonucleotide sequences (usually called tags or anchors) that are absent from a specified genome. These tags/anchors can be appended to gene specific primers for reverse transcriptase polymerase chain reaction experiments, circumventing genomic DNA contaminat...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2147000/ https://www.ncbi.nlm.nih.gov/pubmed/17961214 http://dx.doi.org/10.1186/1472-6750-7-73 |
Sumario: | BACKGROUND: Webtag is a tool providing oligonucleotide sequences (usually called tags or anchors) that are absent from a specified genome. These tags/anchors can be appended to gene specific primers for reverse transcriptase polymerase chain reaction experiments, circumventing genomic DNA contamination. RESULTS: The use of a relational database, in conjunction with a series of scripts written in PHP and Perl, allows the user to rapidly obtain tags that are: 1) suitable for a specific organism, and 2) compatible with other oligonucleotides to be used in the experimental procedures. CONCLUSION: This new web tool allows scientists to easily and rapidly obtain suitable tags for RT-PCR experiments, and is available at . |
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