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Environmental variability and modularity of bacterial metabolic networks

BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment...

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Detalles Bibliográficos
Autores principales: Parter, Merav, Kashtan, Nadav, Alon, Uri
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151768/
https://www.ncbi.nlm.nih.gov/pubmed/17888177
http://dx.doi.org/10.1186/1471-2148-7-169
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author Parter, Merav
Kashtan, Nadav
Alon, Uri
author_facet Parter, Merav
Kashtan, Nadav
Alon, Uri
author_sort Parter, Merav
collection PubMed
description BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment changes over time. However, this theory has not yet been tested using biological data. RESULTS: To address this, we studied the relation between environmental variability and modularity in a natural and well-studied system, the metabolic networks of bacteria. We classified 117 bacterial species according to the degree of variability in their natural habitat. We find that metabolic networks of organisms in variable environments are significantly more modular than networks of organisms that evolved under more constant conditions. CONCLUSION: This study supports the view that variability in the natural habitat of an organism promotes modularity in its metabolic network and perhaps in other biological systems.
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spelling pubmed-21517682007-12-22 Environmental variability and modularity of bacterial metabolic networks Parter, Merav Kashtan, Nadav Alon, Uri BMC Evol Biol Research Article BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment changes over time. However, this theory has not yet been tested using biological data. RESULTS: To address this, we studied the relation between environmental variability and modularity in a natural and well-studied system, the metabolic networks of bacteria. We classified 117 bacterial species according to the degree of variability in their natural habitat. We find that metabolic networks of organisms in variable environments are significantly more modular than networks of organisms that evolved under more constant conditions. CONCLUSION: This study supports the view that variability in the natural habitat of an organism promotes modularity in its metabolic network and perhaps in other biological systems. BioMed Central 2007-09-23 /pmc/articles/PMC2151768/ /pubmed/17888177 http://dx.doi.org/10.1186/1471-2148-7-169 Text en Copyright © 2007 Parter et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Parter, Merav
Kashtan, Nadav
Alon, Uri
Environmental variability and modularity of bacterial metabolic networks
title Environmental variability and modularity of bacterial metabolic networks
title_full Environmental variability and modularity of bacterial metabolic networks
title_fullStr Environmental variability and modularity of bacterial metabolic networks
title_full_unstemmed Environmental variability and modularity of bacterial metabolic networks
title_short Environmental variability and modularity of bacterial metabolic networks
title_sort environmental variability and modularity of bacterial metabolic networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151768/
https://www.ncbi.nlm.nih.gov/pubmed/17888177
http://dx.doi.org/10.1186/1471-2148-7-169
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