Cargando…
Environmental variability and modularity of bacterial metabolic networks
BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment...
Autores principales: | , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2007
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151768/ https://www.ncbi.nlm.nih.gov/pubmed/17888177 http://dx.doi.org/10.1186/1471-2148-7-169 |
_version_ | 1782144770470051840 |
---|---|
author | Parter, Merav Kashtan, Nadav Alon, Uri |
author_facet | Parter, Merav Kashtan, Nadav Alon, Uri |
author_sort | Parter, Merav |
collection | PubMed |
description | BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment changes over time. However, this theory has not yet been tested using biological data. RESULTS: To address this, we studied the relation between environmental variability and modularity in a natural and well-studied system, the metabolic networks of bacteria. We classified 117 bacterial species according to the degree of variability in their natural habitat. We find that metabolic networks of organisms in variable environments are significantly more modular than networks of organisms that evolved under more constant conditions. CONCLUSION: This study supports the view that variability in the natural habitat of an organism promotes modularity in its metabolic network and perhaps in other biological systems. |
format | Text |
id | pubmed-2151768 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-21517682007-12-22 Environmental variability and modularity of bacterial metabolic networks Parter, Merav Kashtan, Nadav Alon, Uri BMC Evol Biol Research Article BACKGROUND: Biological systems are often modular: they can be decomposed into nearly-independent structural units that perform specific functions. The evolutionary origin of modularity is a subject of much current interest. Recent theory suggests that modularity can be enhanced when the environment changes over time. However, this theory has not yet been tested using biological data. RESULTS: To address this, we studied the relation between environmental variability and modularity in a natural and well-studied system, the metabolic networks of bacteria. We classified 117 bacterial species according to the degree of variability in their natural habitat. We find that metabolic networks of organisms in variable environments are significantly more modular than networks of organisms that evolved under more constant conditions. CONCLUSION: This study supports the view that variability in the natural habitat of an organism promotes modularity in its metabolic network and perhaps in other biological systems. BioMed Central 2007-09-23 /pmc/articles/PMC2151768/ /pubmed/17888177 http://dx.doi.org/10.1186/1471-2148-7-169 Text en Copyright © 2007 Parter et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Parter, Merav Kashtan, Nadav Alon, Uri Environmental variability and modularity of bacterial metabolic networks |
title | Environmental variability and modularity of bacterial metabolic networks |
title_full | Environmental variability and modularity of bacterial metabolic networks |
title_fullStr | Environmental variability and modularity of bacterial metabolic networks |
title_full_unstemmed | Environmental variability and modularity of bacterial metabolic networks |
title_short | Environmental variability and modularity of bacterial metabolic networks |
title_sort | environmental variability and modularity of bacterial metabolic networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151768/ https://www.ncbi.nlm.nih.gov/pubmed/17888177 http://dx.doi.org/10.1186/1471-2148-7-169 |
work_keys_str_mv | AT partermerav environmentalvariabilityandmodularityofbacterialmetabolicnetworks AT kashtannadav environmentalvariabilityandmodularityofbacterialmetabolicnetworks AT alonuri environmentalvariabilityandmodularityofbacterialmetabolicnetworks |