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A Generic Mechanism for Adaptive Growth Rate Regulation

How can a microorganism adapt to a variety of environmental conditions despite the existence of a limited number of signal transduction mechanisms? We show that for any growing cells whose gene expression fluctuate stochastically, the adaptive cellular state is inevitably selected by noise, even wit...

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Detalles Bibliográficos
Autores principales: Furusawa, Chikara, Kaneko, Kunihiko
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2186362/
https://www.ncbi.nlm.nih.gov/pubmed/18193939
http://dx.doi.org/10.1371/journal.pcbi.0040003
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author Furusawa, Chikara
Kaneko, Kunihiko
author_facet Furusawa, Chikara
Kaneko, Kunihiko
author_sort Furusawa, Chikara
collection PubMed
description How can a microorganism adapt to a variety of environmental conditions despite the existence of a limited number of signal transduction mechanisms? We show that for any growing cells whose gene expression fluctuate stochastically, the adaptive cellular state is inevitably selected by noise, even without a specific signal transduction network for it. In general, changes in protein concentration in a cell are given by its synthesis minus dilution and degradation, both of which are proportional to the rate of cell growth. In an adaptive state with a higher growth speed, both terms are large and balanced. Under the presence of noise in gene expression, the adaptive state is less affected by stochasticity since both the synthesis and dilution terms are large, while for a nonadaptive state both the terms are smaller so that cells are easily kicked out of the original state by noise. Hence, escape time from a cellular state and the cellular growth rate are negatively correlated. This leads to a selection of adaptive states with higher growth rates, and model simulations confirm this selection to take place in general. The results suggest a general form of adaptation that has never been brought to light—a process that requires no specific mechanisms for sensory adaptation. The present scheme may help explain a wide range of cellular adaptive responses including the metabolic flux optimization for maximal cell growth.
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spelling pubmed-21863622008-01-11 A Generic Mechanism for Adaptive Growth Rate Regulation Furusawa, Chikara Kaneko, Kunihiko PLoS Comput Biol Research Article How can a microorganism adapt to a variety of environmental conditions despite the existence of a limited number of signal transduction mechanisms? We show that for any growing cells whose gene expression fluctuate stochastically, the adaptive cellular state is inevitably selected by noise, even without a specific signal transduction network for it. In general, changes in protein concentration in a cell are given by its synthesis minus dilution and degradation, both of which are proportional to the rate of cell growth. In an adaptive state with a higher growth speed, both terms are large and balanced. Under the presence of noise in gene expression, the adaptive state is less affected by stochasticity since both the synthesis and dilution terms are large, while for a nonadaptive state both the terms are smaller so that cells are easily kicked out of the original state by noise. Hence, escape time from a cellular state and the cellular growth rate are negatively correlated. This leads to a selection of adaptive states with higher growth rates, and model simulations confirm this selection to take place in general. The results suggest a general form of adaptation that has never been brought to light—a process that requires no specific mechanisms for sensory adaptation. The present scheme may help explain a wide range of cellular adaptive responses including the metabolic flux optimization for maximal cell growth. Public Library of Science 2008-01 2008-01-11 /pmc/articles/PMC2186362/ /pubmed/18193939 http://dx.doi.org/10.1371/journal.pcbi.0040003 Text en © 2008 Furusawa and Kaneko. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Furusawa, Chikara
Kaneko, Kunihiko
A Generic Mechanism for Adaptive Growth Rate Regulation
title A Generic Mechanism for Adaptive Growth Rate Regulation
title_full A Generic Mechanism for Adaptive Growth Rate Regulation
title_fullStr A Generic Mechanism for Adaptive Growth Rate Regulation
title_full_unstemmed A Generic Mechanism for Adaptive Growth Rate Regulation
title_short A Generic Mechanism for Adaptive Growth Rate Regulation
title_sort generic mechanism for adaptive growth rate regulation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2186362/
https://www.ncbi.nlm.nih.gov/pubmed/18193939
http://dx.doi.org/10.1371/journal.pcbi.0040003
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