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PlantDB – a versatile database for managing plant research

BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe Pl...

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Detalles Bibliográficos
Autores principales: Exner, Vivien, Hirsch-Hoffmann, Matthias, Gruissem, Wilhelm, Hennig, Lars
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2235859/
https://www.ncbi.nlm.nih.gov/pubmed/18182106
http://dx.doi.org/10.1186/1746-4811-4-1
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author Exner, Vivien
Hirsch-Hoffmann, Matthias
Gruissem, Wilhelm
Hennig, Lars
author_facet Exner, Vivien
Hirsch-Hoffmann, Matthias
Gruissem, Wilhelm
Hennig, Lars
author_sort Exner, Vivien
collection PubMed
description BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe PlantDB – a Microsoft(® )Office Access database – with a user-friendly front-end for managing information relevant for experimental plants. PlantDB can hold information about plants of different species, cultivars or genetic composition. Introduction of a concise identifier system allows easy generation of pedigree trees. In addition, all information about any experimental plant – from growth conditions and dates over extracted samples such as RNA to files containing images of the plants – can be linked unequivocally. CONCLUSION: We have been using PlantDB for several years in our laboratory and found that it greatly facilitates access to relevant information.
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spelling pubmed-22358592008-02-09 PlantDB – a versatile database for managing plant research Exner, Vivien Hirsch-Hoffmann, Matthias Gruissem, Wilhelm Hennig, Lars Plant Methods Software BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe PlantDB – a Microsoft(® )Office Access database – with a user-friendly front-end for managing information relevant for experimental plants. PlantDB can hold information about plants of different species, cultivars or genetic composition. Introduction of a concise identifier system allows easy generation of pedigree trees. In addition, all information about any experimental plant – from growth conditions and dates over extracted samples such as RNA to files containing images of the plants – can be linked unequivocally. CONCLUSION: We have been using PlantDB for several years in our laboratory and found that it greatly facilitates access to relevant information. BioMed Central 2008-01-08 /pmc/articles/PMC2235859/ /pubmed/18182106 http://dx.doi.org/10.1186/1746-4811-4-1 Text en Copyright © 2008 Exner et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Exner, Vivien
Hirsch-Hoffmann, Matthias
Gruissem, Wilhelm
Hennig, Lars
PlantDB – a versatile database for managing plant research
title PlantDB – a versatile database for managing plant research
title_full PlantDB – a versatile database for managing plant research
title_fullStr PlantDB – a versatile database for managing plant research
title_full_unstemmed PlantDB – a versatile database for managing plant research
title_short PlantDB – a versatile database for managing plant research
title_sort plantdb – a versatile database for managing plant research
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2235859/
https://www.ncbi.nlm.nih.gov/pubmed/18182106
http://dx.doi.org/10.1186/1746-4811-4-1
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AT gruissemwilhelm plantdbaversatiledatabaseformanagingplantresearch
AT henniglars plantdbaversatiledatabaseformanagingplantresearch