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PlantDB – a versatile database for managing plant research
BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe Pl...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2235859/ https://www.ncbi.nlm.nih.gov/pubmed/18182106 http://dx.doi.org/10.1186/1746-4811-4-1 |
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author | Exner, Vivien Hirsch-Hoffmann, Matthias Gruissem, Wilhelm Hennig, Lars |
author_facet | Exner, Vivien Hirsch-Hoffmann, Matthias Gruissem, Wilhelm Hennig, Lars |
author_sort | Exner, Vivien |
collection | PubMed |
description | BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe PlantDB – a Microsoft(® )Office Access database – with a user-friendly front-end for managing information relevant for experimental plants. PlantDB can hold information about plants of different species, cultivars or genetic composition. Introduction of a concise identifier system allows easy generation of pedigree trees. In addition, all information about any experimental plant – from growth conditions and dates over extracted samples such as RNA to files containing images of the plants – can be linked unequivocally. CONCLUSION: We have been using PlantDB for several years in our laboratory and found that it greatly facilitates access to relevant information. |
format | Text |
id | pubmed-2235859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-22358592008-02-09 PlantDB – a versatile database for managing plant research Exner, Vivien Hirsch-Hoffmann, Matthias Gruissem, Wilhelm Hennig, Lars Plant Methods Software BACKGROUND: Research in plant science laboratories often involves usage of many different species, cultivars, ecotypes, mutants, alleles or transgenic lines. This creates a great challenge to keep track of the identity of experimental plants and stored samples or seeds. RESULTS: Here, we describe PlantDB – a Microsoft(® )Office Access database – with a user-friendly front-end for managing information relevant for experimental plants. PlantDB can hold information about plants of different species, cultivars or genetic composition. Introduction of a concise identifier system allows easy generation of pedigree trees. In addition, all information about any experimental plant – from growth conditions and dates over extracted samples such as RNA to files containing images of the plants – can be linked unequivocally. CONCLUSION: We have been using PlantDB for several years in our laboratory and found that it greatly facilitates access to relevant information. BioMed Central 2008-01-08 /pmc/articles/PMC2235859/ /pubmed/18182106 http://dx.doi.org/10.1186/1746-4811-4-1 Text en Copyright © 2008 Exner et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Exner, Vivien Hirsch-Hoffmann, Matthias Gruissem, Wilhelm Hennig, Lars PlantDB – a versatile database for managing plant research |
title | PlantDB – a versatile database for managing plant research |
title_full | PlantDB – a versatile database for managing plant research |
title_fullStr | PlantDB – a versatile database for managing plant research |
title_full_unstemmed | PlantDB – a versatile database for managing plant research |
title_short | PlantDB – a versatile database for managing plant research |
title_sort | plantdb – a versatile database for managing plant research |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2235859/ https://www.ncbi.nlm.nih.gov/pubmed/18182106 http://dx.doi.org/10.1186/1746-4811-4-1 |
work_keys_str_mv | AT exnervivien plantdbaversatiledatabaseformanagingplantresearch AT hirschhoffmannmatthias plantdbaversatiledatabaseformanagingplantresearch AT gruissemwilhelm plantdbaversatiledatabaseformanagingplantresearch AT henniglars plantdbaversatiledatabaseformanagingplantresearch |