JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR...

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Autores principales: Bryne, Jan Christian, Valen, Eivind, Tang, Man-Hung Eric, Marstrand, Troels, Winther, Ole, da Piedade, Isabelle, Krogh, Anders, Lenhard, Boris, Sandelin, Albin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238834/
https://www.ncbi.nlm.nih.gov/pubmed/18006571
http://dx.doi.org/10.1093/nar/gkm955
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author Bryne, Jan Christian
Valen, Eivind
Tang, Man-Hung Eric
Marstrand, Troels
Winther, Ole
da Piedade, Isabelle
Krogh, Anders
Lenhard, Boris
Sandelin, Albin
author_facet Bryne, Jan Christian
Valen, Eivind
Tang, Man-Hung Eric
Marstrand, Troels
Winther, Ole
da Piedade, Isabelle
Krogh, Anders
Lenhard, Boris
Sandelin, Albin
author_sort Bryne, Jan Christian
collection PubMed
description JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database—the JASPAR CORE sub-database—has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.
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spelling pubmed-22388342008-02-12 JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Bryne, Jan Christian Valen, Eivind Tang, Man-Hung Eric Marstrand, Troels Winther, Ole da Piedade, Isabelle Krogh, Anders Lenhard, Boris Sandelin, Albin Nucleic Acids Res Articles JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database—the JASPAR CORE sub-database—has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net. Oxford University Press 2008-01 2007-11-15 /pmc/articles/PMC2238834/ /pubmed/18006571 http://dx.doi.org/10.1093/nar/gkm955 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Bryne, Jan Christian
Valen, Eivind
Tang, Man-Hung Eric
Marstrand, Troels
Winther, Ole
da Piedade, Isabelle
Krogh, Anders
Lenhard, Boris
Sandelin, Albin
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title_full JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title_fullStr JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title_full_unstemmed JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title_short JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
title_sort jaspar, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238834/
https://www.ncbi.nlm.nih.gov/pubmed/18006571
http://dx.doi.org/10.1093/nar/gkm955
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