Remediation of the protein data bank archive

The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structur...

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Autores principales: Henrick, Kim, Feng, Zukang, Bluhm, Wolfgang F., Dimitropoulos, Dimitris, Doreleijers, Jurgen F., Dutta, Shuchismita, Flippen-Anderson, Judith L., Ionides, John, Kamada, Chisa, Krissinel, Eugene, Lawson, Catherine L., Markley, John L., Nakamura, Haruki, Newman, Richard, Shimizu, Yukiko, Swaminathan, Jawahar, Velankar, Sameer, Ory, Jeramia, Ulrich, Eldon L., Vranken, Wim, Westbrook, John, Yamashita, Reiko, Yang, Huanwang, Young, Jasmine, Yousufuddin, Muhammed, Berman, Helen M.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238854/
https://www.ncbi.nlm.nih.gov/pubmed/18073189
http://dx.doi.org/10.1093/nar/gkm937
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author Henrick, Kim
Feng, Zukang
Bluhm, Wolfgang F.
Dimitropoulos, Dimitris
Doreleijers, Jurgen F.
Dutta, Shuchismita
Flippen-Anderson, Judith L.
Ionides, John
Kamada, Chisa
Krissinel, Eugene
Lawson, Catherine L.
Markley, John L.
Nakamura, Haruki
Newman, Richard
Shimizu, Yukiko
Swaminathan, Jawahar
Velankar, Sameer
Ory, Jeramia
Ulrich, Eldon L.
Vranken, Wim
Westbrook, John
Yamashita, Reiko
Yang, Huanwang
Young, Jasmine
Yousufuddin, Muhammed
Berman, Helen M.
author_facet Henrick, Kim
Feng, Zukang
Bluhm, Wolfgang F.
Dimitropoulos, Dimitris
Doreleijers, Jurgen F.
Dutta, Shuchismita
Flippen-Anderson, Judith L.
Ionides, John
Kamada, Chisa
Krissinel, Eugene
Lawson, Catherine L.
Markley, John L.
Nakamura, Haruki
Newman, Richard
Shimizu, Yukiko
Swaminathan, Jawahar
Velankar, Sameer
Ory, Jeramia
Ulrich, Eldon L.
Vranken, Wim
Westbrook, John
Yamashita, Reiko
Yang, Huanwang
Young, Jasmine
Yousufuddin, Muhammed
Berman, Helen M.
author_sort Henrick, Kim
collection PubMed
description The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB–RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)–have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.
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spelling pubmed-22388542008-02-12 Remediation of the protein data bank archive Henrick, Kim Feng, Zukang Bluhm, Wolfgang F. Dimitropoulos, Dimitris Doreleijers, Jurgen F. Dutta, Shuchismita Flippen-Anderson, Judith L. Ionides, John Kamada, Chisa Krissinel, Eugene Lawson, Catherine L. Markley, John L. Nakamura, Haruki Newman, Richard Shimizu, Yukiko Swaminathan, Jawahar Velankar, Sameer Ory, Jeramia Ulrich, Eldon L. Vranken, Wim Westbrook, John Yamashita, Reiko Yang, Huanwang Young, Jasmine Yousufuddin, Muhammed Berman, Helen M. Nucleic Acids Res Articles The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB–RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)–have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented. Oxford University Press 2008-01 2007-12-11 /pmc/articles/PMC2238854/ /pubmed/18073189 http://dx.doi.org/10.1093/nar/gkm937 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Henrick, Kim
Feng, Zukang
Bluhm, Wolfgang F.
Dimitropoulos, Dimitris
Doreleijers, Jurgen F.
Dutta, Shuchismita
Flippen-Anderson, Judith L.
Ionides, John
Kamada, Chisa
Krissinel, Eugene
Lawson, Catherine L.
Markley, John L.
Nakamura, Haruki
Newman, Richard
Shimizu, Yukiko
Swaminathan, Jawahar
Velankar, Sameer
Ory, Jeramia
Ulrich, Eldon L.
Vranken, Wim
Westbrook, John
Yamashita, Reiko
Yang, Huanwang
Young, Jasmine
Yousufuddin, Muhammed
Berman, Helen M.
Remediation of the protein data bank archive
title Remediation of the protein data bank archive
title_full Remediation of the protein data bank archive
title_fullStr Remediation of the protein data bank archive
title_full_unstemmed Remediation of the protein data bank archive
title_short Remediation of the protein data bank archive
title_sort remediation of the protein data bank archive
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238854/
https://www.ncbi.nlm.nih.gov/pubmed/18073189
http://dx.doi.org/10.1093/nar/gkm937
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