Cargando…

COXPRESdb: a database of coexpressed gene networks in mammals

A database of coexpressed gene sets can provide valuable information for a wide variety of experimental designs, such as targeting of genes for functional identification, gene regulation and/or protein–protein interactions. Coexpressed gene databases derived from publicly available GeneChip data are...

Descripción completa

Detalles Bibliográficos
Autores principales:	Obayashi, Takeshi, Hayashi, Shinpei, Shibaoka, Masayuki, Saeki, Motoshi, Ohta, Hiroyuki, Kinoshita, Kengo
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2008
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238883/ https://www.ncbi.nlm.nih.gov/pubmed/17932064 http://dx.doi.org/10.1093/nar/gkm840

Ejemplares similares

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals
por: Obayashi, Takeshi, et al.
Publicado: (2013)

COXPRESdb: a database to compare gene coexpression in seven model animals
por: Obayashi, Takeshi, et al.
Publicado: (2011)

ATTED-II provides coexpressed gene networks for Arabidopsis
por: Obayashi, Takeshi, et al.
Publicado: (2009)

ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
por: Obayashi, Takeshi, et al.
Publicado: (2007)

COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations
por: Obayashi, Takeshi, et al.
Publicado: (2022)

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference
por: Obayashi, Takeshi, et al.
Publicado: (2019)

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems
por: Okamura, Yasunobu, et al.
Publicado: (2014)

ALCOdb: Gene Coexpression Database for Microalgae
por: Aoki, Yuichi, et al.
Publicado: (2016)

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
por: Aoki, Yuichi, et al.
Publicado: (2016)

Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules
por: Okamura, Yasunobu, et al.
Publicado: (2015)

Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression
por: Obayashi, Takeshi, et al.
Publicado: (2009)

Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis
por: Kinoshita, Kengo, et al.
Publicado: (2009)

ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering Plants
por: Obayashi, Takeshi, et al.
Publicado: (2011)

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index
por: Obayashi, Takeshi, et al.
Publicado: (2018)

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index
por: Obayashi, Takeshi, et al.
Publicado: (2018)

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants
por: Obayashi, Takeshi, et al.
Publicado: (2014)

Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene
por: Narise, Takafumi, et al.
Publicado: (2017)

Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network
por: Jiang, Xue, et al.
Publicado: (2016)

Coexpression Analysis of the EZH2 Gene Using The Cancer Genome Atlas and Oncomine Databases Identifies Coexpressed Genes Involved in Biological Networks in Breast Cancer, Glioblastoma, and Prostate Cancer
por: Zhu, Jin, et al.
Publicado: (2020)

Geometric Interpretation of Gene Coexpression Network Analysis
por: Horvath, Steve, et al.
Publicado: (2008)

Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview
por: Skinner, Jeff, et al.
Publicado: (2011)

Gene Coexpression Network Comparison via Persistent Homology
por: Duman, Ali Nabi, et al.
Publicado: (2018)

A new method of finding groups of coexpressed genes and conditions of coexpression
por: Anand, Rajat, et al.
Publicado: (2016)

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network
por: Chung, Wen-Yu, et al.
Publicado: (2006)

Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network
por: Lim, Dajeong, et al.
Publicado: (2014)

Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice
por: Takehisa, Hinako, et al.
Publicado: (2015)

Genetic dissection of the gene coexpression network underlying photosynthesis in Populus
por: Xiao, Liang, et al.
Publicado: (2019)

Robust gene coexpression networks using signed distance correlation
por: Pardo-Diaz, Javier, et al.
Publicado: (2021)

A novel biclustering approach with iterative optimization to analyze gene expression data
por: Sutheeworapong, Sawannee, et al.
Publicado: (2012)

Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity
por: Furlotte, Nicholas A., et al.
Publicado: (2011)

Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana
por: Zogopoulos, Vasileios L., et al.
Publicado: (2021)

Weighted Gene Coexpression Network Analysis Identified MicroRNA Coexpression Modules and Related Pathways in Type 2 Diabetes Mellitus
por: Feng, Tianyu, et al.
Publicado: (2019)

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes
por: Childs, Kevin L., et al.
Publicado: (2011)

Identification of Prognostic Genes in Neuroblastoma in Children by Weighted Gene Coexpression Network Analysis
por: Yang, Jun, et al.
Publicado: (2021)

Crucial Genes in Aortic Dissection Identified by Weighted Gene Coexpression Network Analysis
por: Zhang, Hongliang, et al.
Publicado: (2022)

Weighted gene coexpression network analysis strategies applied to mouse weight
por: Fuller, Tova F., et al.
Publicado: (2007)

Hierarchical Modular Structure Identification with Its Applications in Gene Coexpression Networks
por: Zhang, Shuqin
Publicado: (2012)

RiceFREND: a platform for retrieving coexpressed gene networks in rice
por: Sato, Yutaka, et al.
Publicado: (2013)

Drug Repositioning through Systematic Mining of Gene Coexpression Networks in Cancer
por: Ivliev, Alexander E., et al.
Publicado: (2016)

Comparisons of gene coexpression network modules in breast cancer and ovarian cancer
por: Zhang, Shuqin
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_ffru3ab1gft2ho2cu3jesosj7c