The Pfam protein families database

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Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenP...

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Autores principales: Finn, Robert D., Tate, John, Mistry, Jaina, Coggill, Penny C., Sammut, Stephen John, Hotz, Hans-Rudolf, Ceric, Goran, Forslund, Kristoffer, Eddy, Sean R., Sonnhammer, Erik L. L., Bateman, Alex
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238907/
https://www.ncbi.nlm.nih.gov/pubmed/18039703
http://dx.doi.org/10.1093/nar/gkm960
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author Finn, Robert D.
Tate, John
Mistry, Jaina
Coggill, Penny C.
Sammut, Stephen John
Hotz, Hans-Rudolf
Ceric, Goran
Forslund, Kristoffer
Eddy, Sean R.
Sonnhammer, Erik L. L.
Bateman, Alex
author_facet Finn, Robert D.
Tate, John
Mistry, Jaina
Coggill, Penny C.
Sammut, Stephen John
Hotz, Hans-Rudolf
Ceric, Goran
Forslund, Kristoffer
Eddy, Sean R.
Sonnhammer, Erik L. L.
Bateman, Alex
author_sort Finn, Robert D.
collection PubMed
description Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenPept and on sequences from selected metagenomics projects. Pfam is available on the web from the consortium members using a new, consistent and improved website design in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/), as well as from mirror sites in France (http://pfam.jouy.inra.fr/) and South Korea (http://pfam.ccbb.re.kr/).
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spelling pubmed-22389072008-02-12 The Pfam protein families database Finn, Robert D. Tate, John Mistry, Jaina Coggill, Penny C. Sammut, Stephen John Hotz, Hans-Rudolf Ceric, Goran Forslund, Kristoffer Eddy, Sean R. Sonnhammer, Erik L. L. Bateman, Alex Nucleic Acids Res Articles Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenPept and on sequences from selected metagenomics projects. Pfam is available on the web from the consortium members using a new, consistent and improved website design in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/), as well as from mirror sites in France (http://pfam.jouy.inra.fr/) and South Korea (http://pfam.ccbb.re.kr/). Oxford University Press 2008-01 2007-11-26 /pmc/articles/PMC2238907/ /pubmed/18039703 http://dx.doi.org/10.1093/nar/gkm960 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Finn, Robert D.
Tate, John
Mistry, Jaina
Coggill, Penny C.
Sammut, Stephen John
Hotz, Hans-Rudolf
Ceric, Goran
Forslund, Kristoffer
Eddy, Sean R.
Sonnhammer, Erik L. L.
Bateman, Alex
The Pfam protein families database
title The Pfam protein families database
title_full The Pfam protein families database
title_fullStr The Pfam protein families database
title_full_unstemmed The Pfam protein families database
title_short The Pfam protein families database
title_sort pfam protein families database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238907/
https://www.ncbi.nlm.nih.gov/pubmed/18039703
http://dx.doi.org/10.1093/nar/gkm960
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