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Binding MOAD, a high-quality protein–ligand database

Binding MOAD (Mother of All Databases) is a database of 9836 protein–ligand crystal structures. All biologically relevant ligands are annotated, and experimental binding-affinity data is reported when available. Binding MOAD has almost doubled in size since it was originally introduced in 2004, demo...

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Autores principales: Benson, Mark L., Smith, Richard D., Khazanov, Nickolay A., Dimcheff, Brandon, Beaver, John, Dresslar, Peter, Nerothin, Jason, Carlson, Heather A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238910/
https://www.ncbi.nlm.nih.gov/pubmed/18055497
http://dx.doi.org/10.1093/nar/gkm911
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author Benson, Mark L.
Smith, Richard D.
Khazanov, Nickolay A.
Dimcheff, Brandon
Beaver, John
Dresslar, Peter
Nerothin, Jason
Carlson, Heather A.
author_facet Benson, Mark L.
Smith, Richard D.
Khazanov, Nickolay A.
Dimcheff, Brandon
Beaver, John
Dresslar, Peter
Nerothin, Jason
Carlson, Heather A.
author_sort Benson, Mark L.
collection PubMed
description Binding MOAD (Mother of All Databases) is a database of 9836 protein–ligand crystal structures. All biologically relevant ligands are annotated, and experimental binding-affinity data is reported when available. Binding MOAD has almost doubled in size since it was originally introduced in 2004, demonstrating steady growth with each annual update. Several technologies, such as natural language processing, help drive this constant expansion. Along with increasing data, Binding MOAD has improved usability. The website now showcases a faster, more featured viewer to examine the protein–ligand structures. Ligands have additional chemical data, allowing for cheminformatics mining. Lastly, logins are no longer necessary, and Binding MOAD is freely available to all at http://www.BindingMOAD.org.
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spelling pubmed-22389102008-02-12 Binding MOAD, a high-quality protein–ligand database Benson, Mark L. Smith, Richard D. Khazanov, Nickolay A. Dimcheff, Brandon Beaver, John Dresslar, Peter Nerothin, Jason Carlson, Heather A. Nucleic Acids Res Articles Binding MOAD (Mother of All Databases) is a database of 9836 protein–ligand crystal structures. All biologically relevant ligands are annotated, and experimental binding-affinity data is reported when available. Binding MOAD has almost doubled in size since it was originally introduced in 2004, demonstrating steady growth with each annual update. Several technologies, such as natural language processing, help drive this constant expansion. Along with increasing data, Binding MOAD has improved usability. The website now showcases a faster, more featured viewer to examine the protein–ligand structures. Ligands have additional chemical data, allowing for cheminformatics mining. Lastly, logins are no longer necessary, and Binding MOAD is freely available to all at http://www.BindingMOAD.org. Oxford University Press 2008-01 2007-11-30 /pmc/articles/PMC2238910/ /pubmed/18055497 http://dx.doi.org/10.1093/nar/gkm911 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Benson, Mark L.
Smith, Richard D.
Khazanov, Nickolay A.
Dimcheff, Brandon
Beaver, John
Dresslar, Peter
Nerothin, Jason
Carlson, Heather A.
Binding MOAD, a high-quality protein–ligand database
title Binding MOAD, a high-quality protein–ligand database
title_full Binding MOAD, a high-quality protein–ligand database
title_fullStr Binding MOAD, a high-quality protein–ligand database
title_full_unstemmed Binding MOAD, a high-quality protein–ligand database
title_short Binding MOAD, a high-quality protein–ligand database
title_sort binding moad, a high-quality protein–ligand database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238910/
https://www.ncbi.nlm.nih.gov/pubmed/18055497
http://dx.doi.org/10.1093/nar/gkm911
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