RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural cla...

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Detalles Bibliográficos
Autores principales: Bindewald, Eckart, Hayes, Robert, Yingling, Yaroslava G., Kasprzak, Wojciech, Shapiro, Bruce A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238914/
https://www.ncbi.nlm.nih.gov/pubmed/17947325
http://dx.doi.org/10.1093/nar/gkm842
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author Bindewald, Eckart
Hayes, Robert
Yingling, Yaroslava G.
Kasprzak, Wojciech
Shapiro, Bruce A.
author_facet Bindewald, Eckart
Hayes, Robert
Yingling, Yaroslava G.
Kasprzak, Wojciech
Shapiro, Bruce A.
author_sort Bindewald, Eckart
collection PubMed
description We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/
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spelling pubmed-22389142008-02-12 RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign Bindewald, Eckart Hayes, Robert Yingling, Yaroslava G. Kasprzak, Wojciech Shapiro, Bruce A. Nucleic Acids Res Articles We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/ Oxford University Press 2008-01 2007-10-18 /pmc/articles/PMC2238914/ /pubmed/17947325 http://dx.doi.org/10.1093/nar/gkm842 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Bindewald, Eckart
Hayes, Robert
Yingling, Yaroslava G.
Kasprzak, Wojciech
Shapiro, Bruce A.
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title_full RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title_fullStr RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title_full_unstemmed RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title_short RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
title_sort rnajunction: a database of rna junctions and kissing loops for three-dimensional structural analysis and nanodesign
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238914/
https://www.ncbi.nlm.nih.gov/pubmed/17947325
http://dx.doi.org/10.1093/nar/gkm842
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