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Update of ASRP: the Arabidopsis Small RNA Project database

Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of incr...

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Autores principales: Backman, Tyler W. H., Sullivan, Christopher M., Cumbie, Jason S., Miller, Zachary A., Chapman, Elisabeth J., Fahlgren, Noah, Givan, Scott A., Carrington, James C., Kasschau, Kristin D.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238918/
https://www.ncbi.nlm.nih.gov/pubmed/17999994
http://dx.doi.org/10.1093/nar/gkm997
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author Backman, Tyler W. H.
Sullivan, Christopher M.
Cumbie, Jason S.
Miller, Zachary A.
Chapman, Elisabeth J.
Fahlgren, Noah
Givan, Scott A.
Carrington, James C.
Kasschau, Kristin D.
author_facet Backman, Tyler W. H.
Sullivan, Christopher M.
Cumbie, Jason S.
Miller, Zachary A.
Chapman, Elisabeth J.
Fahlgren, Noah
Givan, Scott A.
Carrington, James C.
Kasschau, Kristin D.
author_sort Backman, Tyler W. H.
collection PubMed
description Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/
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spelling pubmed-22389182008-02-12 Update of ASRP: the Arabidopsis Small RNA Project database Backman, Tyler W. H. Sullivan, Christopher M. Cumbie, Jason S. Miller, Zachary A. Chapman, Elisabeth J. Fahlgren, Noah Givan, Scott A. Carrington, James C. Kasschau, Kristin D. Nucleic Acids Res Articles Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/ Oxford University Press 2008-01 2007-11-13 /pmc/articles/PMC2238918/ /pubmed/17999994 http://dx.doi.org/10.1093/nar/gkm997 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Backman, Tyler W. H.
Sullivan, Christopher M.
Cumbie, Jason S.
Miller, Zachary A.
Chapman, Elisabeth J.
Fahlgren, Noah
Givan, Scott A.
Carrington, James C.
Kasschau, Kristin D.
Update of ASRP: the Arabidopsis Small RNA Project database
title Update of ASRP: the Arabidopsis Small RNA Project database
title_full Update of ASRP: the Arabidopsis Small RNA Project database
title_fullStr Update of ASRP: the Arabidopsis Small RNA Project database
title_full_unstemmed Update of ASRP: the Arabidopsis Small RNA Project database
title_short Update of ASRP: the Arabidopsis Small RNA Project database
title_sort update of asrp: the arabidopsis small rna project database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238918/
https://www.ncbi.nlm.nih.gov/pubmed/17999994
http://dx.doi.org/10.1093/nar/gkm997
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