PROCOGNATE: a cognate ligand domain mapping for enzymes

PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as...

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Detalles Bibliográficos
Autores principales: Bashton, Matthew, Nobeli, Irene, Thornton, Janet M.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238937/
https://www.ncbi.nlm.nih.gov/pubmed/17720712
http://dx.doi.org/10.1093/nar/gkm611
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author Bashton, Matthew
Nobeli, Irene
Thornton, Janet M.
author_facet Bashton, Matthew
Nobeli, Irene
Thornton, Janet M.
author_sort Bashton, Matthew
collection PubMed
description PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/
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spelling pubmed-22389372008-02-12 PROCOGNATE: a cognate ligand domain mapping for enzymes Bashton, Matthew Nobeli, Irene Thornton, Janet M. Nucleic Acids Res Articles PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/ Oxford University Press 2008-01 2007-08-24 /pmc/articles/PMC2238937/ /pubmed/17720712 http://dx.doi.org/10.1093/nar/gkm611 Text en © 2007 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Bashton, Matthew
Nobeli, Irene
Thornton, Janet M.
PROCOGNATE: a cognate ligand domain mapping for enzymes
title PROCOGNATE: a cognate ligand domain mapping for enzymes
title_full PROCOGNATE: a cognate ligand domain mapping for enzymes
title_fullStr PROCOGNATE: a cognate ligand domain mapping for enzymes
title_full_unstemmed PROCOGNATE: a cognate ligand domain mapping for enzymes
title_short PROCOGNATE: a cognate ligand domain mapping for enzymes
title_sort procognate: a cognate ligand domain mapping for enzymes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238937/
https://www.ncbi.nlm.nih.gov/pubmed/17720712
http://dx.doi.org/10.1093/nar/gkm611
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AT nobeliirene procognateacognateliganddomainmappingforenzymes
AT thorntonjanetm procognateacognateliganddomainmappingforenzymes

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