PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

PHOSIDA , a phosphorylation site database, integrates thousands of high-confidence in vivo phosphosites identified by mass spectrometry-based proteomics in various species. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dyna...

Descripción completa

Detalles Bibliográficos
Autores principales: Gnad, Florian, Ren, Shubin, Cox, Juergen, Olsen, Jesper V, Macek, Boris, Oroshi, Mario, Mann, Matthias
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2007
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258193/
https://www.ncbi.nlm.nih.gov/pubmed/18039369
http://dx.doi.org/10.1186/gb-2007-8-11-r250
Descripción
Sumario:PHOSIDA , a phosphorylation site database, integrates thousands of high-confidence in vivo phosphosites identified by mass spectrometry-based proteomics in various species. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus. Using support vector machines, PHOSIDA also predicts phosphosites.

Ejemplares similares