Cargando…

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

BACKGROUND: Until recently, only a small number of low- and mid-throughput methods have been used for single nucleotide polymorphism (SNP) discovery and genotyping in grapevine (Vitis vinifera L.). However, following completion of the sequence of the highly heterozygous genome of Pinot Noir, it has...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pindo, Massimo, Vezzulli, Silvia, Coppola, Giuseppina, Cartwright, Dustin A, Zharkikh, Andrey, Velasco, Riccardo, Troggio, Michela
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268689/ https://www.ncbi.nlm.nih.gov/pubmed/18226250 http://dx.doi.org/10.1186/1471-2229-8-12

Ejemplares similares

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
por: Lijavetzky, Diego, et al.
Publicado: (2007)

A SNP transferability survey within the genus Vitis
por: Vezzulli, Silvia, et al.
Publicado: (2008)

GMFilter and SXTestPlate: software tools for improving the SNPlex™ genotyping system
por: Teuber, Markus, et al.
Publicado: (2009)

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar
por: Scalabrin, Simone, et al.
Publicado: (2010)

A high-density integrated map for grapevine based on three mapping populations genotyped by the Vitis18K SNP chip
por: Vervalle, Jessica A., et al.
Publicado: (2022)

A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
por: Velasco, Riccardo, et al.
Publicado: (2007)

Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
por: D’Onofrio, Claudio, et al.
Publicado: (2021)

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
por: Kirov, George, et al.
Publicado: (2006)

Comparison of three PCR-based assays for SNP genotyping in plants
por: Broccanello, Chiara, et al.
Publicado: (2018)

High-Throughput SNP Genotyping
por: Jenkins, Suzanne, et al.
Publicado: (2002)

Advantages of Amplifluor-like SNP markers over KASP in plant genotyping
por: Jatayev, Satyvaldy, et al.
Publicado: (2017)

Comparison of PrASE and Pyrosequencing for SNP Genotyping
por: Käller, Max, et al.
Publicado: (2006)

Silhouette scores for assessment of SNP genotype clusters
por: Lovmar, Lovisa, et al.
Publicado: (2005)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

SNP discovery in swine by reduced representation and high throughput pyrosequencing
por: Wiedmann, Ralph T, et al.
Publicado: (2008)

High-throughput SNP discovery and assay development in common bean
por: Hyten, David L, et al.
Publicado: (2010)

A new image-based tool for the high throughput phenotyping of pollen viability: evaluation of inter- and intra-cultivar diversity in grapevine
por: Tello, Javier, et al.
Publicado: (2018)

Combining target enrichment with barcode multiplexing for high throughput SNP discovery
por: Cummings, Nik, et al.
Publicado: (2010)

A high-throughput SNP discovery strategy for RNA-seq data
por: Zhao, Yun, et al.
Publicado: (2019)

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array
por: Antanaviciute, Laima, et al.
Publicado: (2012)

A new chicken 55K SNP genotyping array
por: Liu, Ranran, et al.
Publicado: (2019)

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants
por: Yang, Guo-Qian, et al.
Publicado: (2016)

Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
por: Chuang, Li-Yeh, et al.
Publicado: (2013)

Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping
por: Hayden, Matthew J, et al.
Publicado: (2008)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates
por: Sengstake, Sarah, et al.
Publicado: (2014)

Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species
por: Hirotsu, Naoki, et al.
Publicado: (2010)

Development and implementation of high-throughput SNP genotyping in barley
por: Close, Timothy J, et al.
Publicado: (2009)

High throughput SNP discovery and genotyping in hexaploid wheat
por: Rimbert, Hélène, et al.
Publicado: (2018)

An optimized histological proceeding to study the female gametophyte development in grapevine
por: Moreno-Sanz, P., et al.
Publicado: (2020)

Secondary and primary metabolites reveal putative resistance-associated biomarkers against Erysiphe necator in resistant grapevine genotypes
por: Ciubotaru, Ramona Mihaela, et al.
Publicado: (2023)

The grapevine gene nomenclature system
por: Grimplet, Jérôme, et al.
Publicado: (2014)

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays
por: Chai, High Seng, et al.
Publicado: (2010)

Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar)
por: Johnston, Susan E, et al.
Publicado: (2013)

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice
por: Edwards, Jeremy D, et al.
Publicado: (2008)

Feasibility of High-Throughput Genome-Wide Genotyping using DNA from Stored Buccal Cell Samples
por: Loomis, Stephanie J., et al.
Publicado: (2010)

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)
por: Bianco, Luca, et al.
Publicado: (2014)

GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data
por: Melo, Arthur T. O., et al.
Publicado: (2016)

A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power
por: Andrews, Kimberly R., et al.
Publicado: (2021)

Protocol: a versatile, inexpensive, high-throughput plant genomic DNA extraction method suitable for genotyping-by-sequencing
por: Anderson, Craig B., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_qlmpae001pb9ejt777c4071dl6