Cargando…

Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans

BACKGROUND: Previous work has demonstrated the potential for peripheral blood (PB) gene expression profiling for the detection of disease or environmental exposures. METHODS AND FINDINGS: We have sought to determine the impact of several variables on the PB gene expression profile of an environmenta...

Descripción completa

Detalles Bibliográficos
Autores principales: Meadows, Sarah K., Dressman, Holly K., Muramoto, Garrett G., Himburg, Heather, Salter, Alice, Wei, ZhengZheng, Ginsburg, Geoff, Chao, Nelson J., Nevins, Joseph R., Chute, John P.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2271127/
https://www.ncbi.nlm.nih.gov/pubmed/18382685
http://dx.doi.org/10.1371/journal.pone.0001912
_version_ 1782151798375579648
author Meadows, Sarah K.
Dressman, Holly K.
Muramoto, Garrett G.
Himburg, Heather
Salter, Alice
Wei, ZhengZheng
Ginsburg, Geoff
Chao, Nelson J.
Nevins, Joseph R.
Chute, John P.
author_facet Meadows, Sarah K.
Dressman, Holly K.
Muramoto, Garrett G.
Himburg, Heather
Salter, Alice
Wei, ZhengZheng
Ginsburg, Geoff
Chao, Nelson J.
Nevins, Joseph R.
Chute, John P.
author_sort Meadows, Sarah K.
collection PubMed
description BACKGROUND: Previous work has demonstrated the potential for peripheral blood (PB) gene expression profiling for the detection of disease or environmental exposures. METHODS AND FINDINGS: We have sought to determine the impact of several variables on the PB gene expression profile of an environmental exposure, ionizing radiation, and to determine the specificity of the PB signature of radiation versus other genotoxic stresses. Neither genotype differences nor the time of PB sampling caused any lessening of the accuracy of PB signatures to predict radiation exposure, but sex difference did influence the accuracy of the prediction of radiation exposure at the lowest level (50 cGy). A PB signature of sepsis was also generated and both the PB signature of radiation and the PB signature of sepsis were found to be 100% specific at distinguishing irradiated from septic animals. We also identified human PB signatures of radiation exposure and chemotherapy treatment which distinguished irradiated patients and chemotherapy-treated individuals within a heterogeneous population with accuracies of 90% and 81%, respectively. CONCLUSIONS: We conclude that PB gene expression profiles can be identified in mice and humans that are accurate in predicting medical conditions, are specific to each condition and remain highly accurate over time.
format Text
id pubmed-2271127
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-22711272008-04-02 Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans Meadows, Sarah K. Dressman, Holly K. Muramoto, Garrett G. Himburg, Heather Salter, Alice Wei, ZhengZheng Ginsburg, Geoff Chao, Nelson J. Nevins, Joseph R. Chute, John P. PLoS One Research Article BACKGROUND: Previous work has demonstrated the potential for peripheral blood (PB) gene expression profiling for the detection of disease or environmental exposures. METHODS AND FINDINGS: We have sought to determine the impact of several variables on the PB gene expression profile of an environmental exposure, ionizing radiation, and to determine the specificity of the PB signature of radiation versus other genotoxic stresses. Neither genotype differences nor the time of PB sampling caused any lessening of the accuracy of PB signatures to predict radiation exposure, but sex difference did influence the accuracy of the prediction of radiation exposure at the lowest level (50 cGy). A PB signature of sepsis was also generated and both the PB signature of radiation and the PB signature of sepsis were found to be 100% specific at distinguishing irradiated from septic animals. We also identified human PB signatures of radiation exposure and chemotherapy treatment which distinguished irradiated patients and chemotherapy-treated individuals within a heterogeneous population with accuracies of 90% and 81%, respectively. CONCLUSIONS: We conclude that PB gene expression profiles can be identified in mice and humans that are accurate in predicting medical conditions, are specific to each condition and remain highly accurate over time. Public Library of Science 2008-04-02 /pmc/articles/PMC2271127/ /pubmed/18382685 http://dx.doi.org/10.1371/journal.pone.0001912 Text en Meadows et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Meadows, Sarah K.
Dressman, Holly K.
Muramoto, Garrett G.
Himburg, Heather
Salter, Alice
Wei, ZhengZheng
Ginsburg, Geoff
Chao, Nelson J.
Nevins, Joseph R.
Chute, John P.
Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title_full Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title_fullStr Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title_full_unstemmed Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title_short Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
title_sort gene expression signatures of radiation response are specific, durable and accurate in mice and humans
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2271127/
https://www.ncbi.nlm.nih.gov/pubmed/18382685
http://dx.doi.org/10.1371/journal.pone.0001912
work_keys_str_mv AT meadowssarahk geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT dressmanhollyk geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT muramotogarrettg geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT himburgheather geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT salteralice geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT weizhengzheng geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT ginsburggeoff geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT chaonelsonj geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT nevinsjosephr geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans
AT chutejohnp geneexpressionsignaturesofradiationresponsearespecificdurableandaccurateinmiceandhumans