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An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients

Germline genetics, gender and hormonal-signaling pathways are all well described modifiers of cancer risk and progression. Although an improved understanding of how germline genetic variants interact with other cancer risk factors may allow better prevention and treatment of human cancer, measuring...

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Autores principales: Atwal, Gurinder Singh, Rabadán, Raúl, Lozano, Guillermina, Strong, Louise C., Ruijs, Mariëlle W. G., Schmidt, Marjanka K., van't Veer, Laura J., Nevanlinna, Heli, Tommiska, Johanna, Aittomäki, Kristiina, Bougeard, Gaelle, Frebourg, Thierry, Levine, Arnold J., Bond, Gareth L.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276689/
https://www.ncbi.nlm.nih.gov/pubmed/18398474
http://dx.doi.org/10.1371/journal.pone.0001951
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author Atwal, Gurinder Singh
Rabadán, Raúl
Lozano, Guillermina
Strong, Louise C.
Ruijs, Mariëlle W. G.
Schmidt, Marjanka K.
van't Veer, Laura J.
Nevanlinna, Heli
Tommiska, Johanna
Aittomäki, Kristiina
Bougeard, Gaelle
Frebourg, Thierry
Levine, Arnold J.
Bond, Gareth L.
author_facet Atwal, Gurinder Singh
Rabadán, Raúl
Lozano, Guillermina
Strong, Louise C.
Ruijs, Mariëlle W. G.
Schmidt, Marjanka K.
van't Veer, Laura J.
Nevanlinna, Heli
Tommiska, Johanna
Aittomäki, Kristiina
Bougeard, Gaelle
Frebourg, Thierry
Levine, Arnold J.
Bond, Gareth L.
author_sort Atwal, Gurinder Singh
collection PubMed
description Germline genetics, gender and hormonal-signaling pathways are all well described modifiers of cancer risk and progression. Although an improved understanding of how germline genetic variants interact with other cancer risk factors may allow better prevention and treatment of human cancer, measuring and quantifying these interactions is challenging. In other areas of research, Information Theory has been used to quantitatively describe similar multivariate interactions. We implemented a novel information-theoretic analysis to measure the joint effect of a high frequency germline genetic variant of the p53 tumor suppressor pathway (MDM2 SNP309 T/G) and gender on clinical cancer phenotypes. This analysis quantitatively describes synergistic interactions among gender, the MDM2 SNP309 locus, and the age of onset of tumorigenesis in p53 mutation carriers. These results offer a molecular and genetic basis for the observed sexual dimorphism of cancer risk in p53 mutation carriers and a model is proposed that suggests a novel cancer prevention strategy for p53 mutation carriers.
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spelling pubmed-22766892008-04-09 An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients Atwal, Gurinder Singh Rabadán, Raúl Lozano, Guillermina Strong, Louise C. Ruijs, Mariëlle W. G. Schmidt, Marjanka K. van't Veer, Laura J. Nevanlinna, Heli Tommiska, Johanna Aittomäki, Kristiina Bougeard, Gaelle Frebourg, Thierry Levine, Arnold J. Bond, Gareth L. PLoS One Research Article Germline genetics, gender and hormonal-signaling pathways are all well described modifiers of cancer risk and progression. Although an improved understanding of how germline genetic variants interact with other cancer risk factors may allow better prevention and treatment of human cancer, measuring and quantifying these interactions is challenging. In other areas of research, Information Theory has been used to quantitatively describe similar multivariate interactions. We implemented a novel information-theoretic analysis to measure the joint effect of a high frequency germline genetic variant of the p53 tumor suppressor pathway (MDM2 SNP309 T/G) and gender on clinical cancer phenotypes. This analysis quantitatively describes synergistic interactions among gender, the MDM2 SNP309 locus, and the age of onset of tumorigenesis in p53 mutation carriers. These results offer a molecular and genetic basis for the observed sexual dimorphism of cancer risk in p53 mutation carriers and a model is proposed that suggests a novel cancer prevention strategy for p53 mutation carriers. Public Library of Science 2008-04-09 /pmc/articles/PMC2276689/ /pubmed/18398474 http://dx.doi.org/10.1371/journal.pone.0001951 Text en Bond et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Atwal, Gurinder Singh
Rabadán, Raúl
Lozano, Guillermina
Strong, Louise C.
Ruijs, Mariëlle W. G.
Schmidt, Marjanka K.
van't Veer, Laura J.
Nevanlinna, Heli
Tommiska, Johanna
Aittomäki, Kristiina
Bougeard, Gaelle
Frebourg, Thierry
Levine, Arnold J.
Bond, Gareth L.
An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title_full An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title_fullStr An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title_full_unstemmed An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title_short An Information-Theoretic Analysis of Genetics, Gender and Age in Cancer Patients
title_sort information-theoretic analysis of genetics, gender and age in cancer patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276689/
https://www.ncbi.nlm.nih.gov/pubmed/18398474
http://dx.doi.org/10.1371/journal.pone.0001951
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