Cargando…
Dimensionality and Dynamics in the Behavior of C. elegans
A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimen...
Autores principales: | , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2008
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276863/ https://www.ncbi.nlm.nih.gov/pubmed/18389066 http://dx.doi.org/10.1371/journal.pcbi.1000028 |
_version_ | 1782152011816370176 |
---|---|
author | Stephens, Greg J. Johnson-Kerner, Bethany Bialek, William Ryu, William S. |
author_facet | Stephens, Greg J. Johnson-Kerner, Bethany Bialek, William Ryu, William S. |
author_sort | Stephens, Greg J. |
collection | PubMed |
description | A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimensions provide a quantitative description of worm behavior, and we partially reconstruct “equations of motion” for the dynamics in this space. These dynamics have multiple attractors, and we find that the worm visits these in a rapid and almost completely deterministic response to weak thermal stimuli. Stimulus-dependent correlations among the different modes suggest that one can generate more reliable behaviors by synchronizing stimuli to the state of the worm in shape space. We confirm this prediction, effectively “steering” the worm in real time. |
format | Text |
id | pubmed-2276863 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-22768632008-04-25 Dimensionality and Dynamics in the Behavior of C. elegans Stephens, Greg J. Johnson-Kerner, Bethany Bialek, William Ryu, William S. PLoS Comput Biol Research Article A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimensions provide a quantitative description of worm behavior, and we partially reconstruct “equations of motion” for the dynamics in this space. These dynamics have multiple attractors, and we find that the worm visits these in a rapid and almost completely deterministic response to weak thermal stimuli. Stimulus-dependent correlations among the different modes suggest that one can generate more reliable behaviors by synchronizing stimuli to the state of the worm in shape space. We confirm this prediction, effectively “steering” the worm in real time. Public Library of Science 2008-04-25 /pmc/articles/PMC2276863/ /pubmed/18389066 http://dx.doi.org/10.1371/journal.pcbi.1000028 Text en Stephens et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Stephens, Greg J. Johnson-Kerner, Bethany Bialek, William Ryu, William S. Dimensionality and Dynamics in the Behavior of C. elegans |
title | Dimensionality and Dynamics in the Behavior of C. elegans
|
title_full | Dimensionality and Dynamics in the Behavior of C. elegans
|
title_fullStr | Dimensionality and Dynamics in the Behavior of C. elegans
|
title_full_unstemmed | Dimensionality and Dynamics in the Behavior of C. elegans
|
title_short | Dimensionality and Dynamics in the Behavior of C. elegans
|
title_sort | dimensionality and dynamics in the behavior of c. elegans |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276863/ https://www.ncbi.nlm.nih.gov/pubmed/18389066 http://dx.doi.org/10.1371/journal.pcbi.1000028 |
work_keys_str_mv | AT stephensgregj dimensionalityanddynamicsinthebehaviorofcelegans AT johnsonkernerbethany dimensionalityanddynamicsinthebehaviorofcelegans AT bialekwilliam dimensionalityanddynamicsinthebehaviorofcelegans AT ryuwilliams dimensionalityanddynamicsinthebehaviorofcelegans |