Cargando…

Dimensionality and Dynamics in the Behavior of C. elegans

A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimen...

Descripción completa

Detalles Bibliográficos
Autores principales: Stephens, Greg J., Johnson-Kerner, Bethany, Bialek, William, Ryu, William S.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276863/
https://www.ncbi.nlm.nih.gov/pubmed/18389066
http://dx.doi.org/10.1371/journal.pcbi.1000028
_version_ 1782152011816370176
author Stephens, Greg J.
Johnson-Kerner, Bethany
Bialek, William
Ryu, William S.
author_facet Stephens, Greg J.
Johnson-Kerner, Bethany
Bialek, William
Ryu, William S.
author_sort Stephens, Greg J.
collection PubMed
description A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimensions provide a quantitative description of worm behavior, and we partially reconstruct “equations of motion” for the dynamics in this space. These dynamics have multiple attractors, and we find that the worm visits these in a rapid and almost completely deterministic response to weak thermal stimuli. Stimulus-dependent correlations among the different modes suggest that one can generate more reliable behaviors by synchronizing stimuli to the state of the worm in shape space. We confirm this prediction, effectively “steering” the worm in real time.
format Text
id pubmed-2276863
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-22768632008-04-25 Dimensionality and Dynamics in the Behavior of C. elegans Stephens, Greg J. Johnson-Kerner, Bethany Bialek, William Ryu, William S. PLoS Comput Biol Research Article A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here, we show that the space of shapes adopted by the nematode Caenorhabditis elegans is low dimensional, with just four dimensions accounting for 95% of the shape variance. These dimensions provide a quantitative description of worm behavior, and we partially reconstruct “equations of motion” for the dynamics in this space. These dynamics have multiple attractors, and we find that the worm visits these in a rapid and almost completely deterministic response to weak thermal stimuli. Stimulus-dependent correlations among the different modes suggest that one can generate more reliable behaviors by synchronizing stimuli to the state of the worm in shape space. We confirm this prediction, effectively “steering” the worm in real time. Public Library of Science 2008-04-25 /pmc/articles/PMC2276863/ /pubmed/18389066 http://dx.doi.org/10.1371/journal.pcbi.1000028 Text en Stephens et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Stephens, Greg J.
Johnson-Kerner, Bethany
Bialek, William
Ryu, William S.
Dimensionality and Dynamics in the Behavior of C. elegans
title Dimensionality and Dynamics in the Behavior of C. elegans
title_full Dimensionality and Dynamics in the Behavior of C. elegans
title_fullStr Dimensionality and Dynamics in the Behavior of C. elegans
title_full_unstemmed Dimensionality and Dynamics in the Behavior of C. elegans
title_short Dimensionality and Dynamics in the Behavior of C. elegans
title_sort dimensionality and dynamics in the behavior of c. elegans
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2276863/
https://www.ncbi.nlm.nih.gov/pubmed/18389066
http://dx.doi.org/10.1371/journal.pcbi.1000028
work_keys_str_mv AT stephensgregj dimensionalityanddynamicsinthebehaviorofcelegans
AT johnsonkernerbethany dimensionalityanddynamicsinthebehaviorofcelegans
AT bialekwilliam dimensionalityanddynamicsinthebehaviorofcelegans
AT ryuwilliams dimensionalityanddynamicsinthebehaviorofcelegans