Cargando…

Empirical Bayes analysis of single nucleotide polymorphisms

BACKGROUND: An important goal of whole-genome studies concerned with single nucleotide polymorphisms (SNPs) is the identification of SNPs associated with a covariate of interest such as the case-control status or the type of cancer. Since these studies often comprise the genotypes of hundreds of tho...

Descripción completa

Detalles Bibliográficos
Autores principales:	Schwender, Holger, Ickstadt, Katja
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335278/ https://www.ncbi.nlm.nih.gov/pubmed/18325106 http://dx.doi.org/10.1186/1471-2105-9-144

Ejemplares similares

Comparison of weighting approaches for genetic risk scores in gene-environment interaction studies
por: Hüls, Anke, et al.
Publicado: (2017)

β-empirical Bayes inference and model diagnosis of microarray data
por: Hossain Mollah, Mohammad Manir, et al.
Publicado: (2012)

Empirical Bayes models for multiple probe type microarrays at the probe level
por: Åstrand, Magnus, et al.
Publicado: (2008)

Alternative empirical Bayes models for adjusting for batch effects in genomic studies
por: Zhang, Yuqing, et al.
Publicado: (2018)

An empirical Bayes approach to normalization and differential abundance testing for microbiome data
por: Liu, Tiantian, et al.
Publicado: (2020)

Evolutionary algorithms for the selection of single nucleotide polymorphisms
por: Hubley, Robert M, et al.
Publicado: (2003)

Rapid single nucleotide polymorphism mapping in C. elegans
por: Davis, M Wayne, et al.
Publicado: (2005)

Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus
por: Rogers, Stephanie M, et al.
Publicado: (2012)

Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology
por: Hill, Steven M, et al.
Publicado: (2012)

Analyzing 2D gel images using a two-component empirical bayes model
por: Li, Feng, et al.
Publicado: (2011)

Bayes and empirical Bayes methods for data analysis /
por: Carlin, Bradley P.
Publicado: (2000)

Bayes and empirical Bayes methods for data analysis
por: Carlin, Bradley P.
Publicado: (1998)

Identification of field caught Anopheles gambiae s.s. and Anopheles arabiensis by TaqMan single nucleotide polymorphism genotyping
por: Walker, Edward D, et al.
Publicado: (2007)

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data
por: Galinsky, Kevin, et al.
Publicado: (2015)

SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management
por: Wang, Lin, et al.
Publicado: (2005)

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays
por: Wang, Jun, et al.
Publicado: (2009)

EFIN: predicting the functional impact of nonsynonymous single nucleotide polymorphisms in human genome
por: Zeng, Shuai, et al.
Publicado: (2014)

Detection of gene-environment interactions in the presence of linkage disequilibrium and noise by using genetic risk scores with internal weights from elastic net regression
por: Hüls, Anke, et al.
Publicado: (2017)

Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression
por: Madjar, Katrin, et al.
Publicado: (2021)

A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage
por: Wang, Jianmin, et al.
Publicado: (2005)

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
por: Christensen, Kris A, et al.
Publicado: (2013)

Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate
por: Yang, Zhenyu, et al.
Publicado: (2013)

Development of a TaqMan Allelic Discrimination Assay for detection of Single Nucleotides Polymorphisms associated with anti-malarial drug resistance
por: Kamau, Edwin, et al.
Publicado: (2012)

Detection of three closely located single nucleotide polymorphisms in the EAAT2 promoter: comparison of single-strand conformational polymorphism (SSCP), pyrosequencing and Sanger sequencing
por: Rajatileka, Shavanthi, et al.
Publicado: (2014)

Method for determination of (-102C>T) single nucleotide polymorphism in the human manganese superoxide dismutase promoter
por: Martin, Robert CG, et al.
Publicado: (2004)

Empirical Bayes methods
por: Maritz, J S, et al.
Publicado: (2018)

Assignment of Streptococcus agalactiae isolates to clonal complexes using a small set of single nucleotide polymorphisms
por: Honsa, Erin, et al.
Publicado: (2008)

Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans
por: Xavier, A., et al.
Publicado: (2016)

Distinct SNP Combinations Confer Susceptibility to Urinary Bladder Cancer in Smokers and Non-Smokers
por: Schwender, Holger, et al.
Publicado: (2012)

IMP PCR primers detect single nucleotide polymorphisms for Anopheles gambiae species identification, Mopti and Savanna rDNA types, and resistance to dieldrin in Anopheles arabiensis
por: Wilkins, Elien E, et al.
Publicado: (2006)

Quantify single nucleotide polymorphism (SNP) ratio in pooled DNA based on normalized fluorescence real-time PCR
por: Yu, Airong, et al.
Publicado: (2006)

Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing
por: Houston, Derek D, et al.
Publicado: (2012)

Correction: Distinct SNP Combinations Confer Susceptibility to Urinary Bladder Cancer in Smokers and Non-Smokers
por: Schwender, Holger, et al.
Publicado: (2015)

An empirical workflow for genome-wide single nucleotide polymorphism-based predictive modeling
por: Floudas, Charalampos S., et al.
Publicado: (2013)

Empirical Bayes Matrix Factorization
por: Wang, Wei, et al.
Publicado: (2021)

Evaluation of a microarray-hybridization based method applicable for discovery of single nucleotide polymorphisms (SNPs) in the Pseudomonas aeruginosa genome
por: Dötsch, Andreas, et al.
Publicado: (2009)

Intergenomic single nucleotide polymorphisms as a tool for bacterial artificial chromosome contig building of homoeologous Brassica napus regions
por: Cao, Hieu Xuan, et al.
Publicado: (2014)

Screening of a Brassica napus bacterial artificial chromosome library using highly parallel single nucleotide polymorphism assays
por: Cao, Hieu Xuan, et al.
Publicado: (2013)

Empirical Bayes Analysis of Quantitative Proteomics Experiments
por: Margolin, Adam A., et al.
Publicado: (2009)

Uncovering distinct protein-network topologies in heterogeneous cell populations
por: Wieczorek, Jakob, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_aigb9q0fk0a08avq1unvh6ikt2