Cargando…

NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops

In a combined NMR/MD study, the temperature-dependent changes in the conformation of two members of the RNA YNMG-tetraloop motif (cUUCGg and uCACGg) have been investigated at temperatures of 298, 317 and 325 K. The two members have considerable different thermal stability and biological functions. I...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ferner, Jan, Villa, Alessandra, Duchardt, Elke, Widjajakusuma, Elisabeth, Wöhnert, Jens, Stock, Gerhard, Schwalbe, Harald
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2008
Materias:	Structural Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2346598/ https://www.ncbi.nlm.nih.gov/pubmed/18272534 http://dx.doi.org/10.1093/nar/gkm1183

Ejemplares similares

High-resolution structure of stem-loop 4 from the 5′-UTR of SARS-CoV-2 solved by solution state NMR
por: Vögele, Jennifer, et al.
Publicado: (2023)

High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA
por: Nozinovic, Senada, et al.
Publicado: (2010)

Structure and dynamics of the deoxyguanosine-sensing riboswitch studied by NMR-spectroscopy
por: Wacker, Anna, et al.
Publicado: (2011)

L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy
por: Jonker, Hendrik R. A., et al.
Publicado: (2007)

Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine
por: Duchardt-Ferner, Elke, et al.
Publicado: (2020)

Dissecting the influence of Mg(2+) on 3D architecture and ligand-binding of the guanine-sensing riboswitch aptamer domain
por: Buck, Janina, et al.
Publicado: (2010)

The structure of the SAM/SAH-binding riboswitch
por: Weickhmann, A Katharina, et al.
Publicado: (2019)

Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics
por: DePaul, Allison J., et al.
Publicado: (2010)

Structural and functional analysis of the archaeal endonuclease Nob1
por: Veith, Thomas, et al.
Publicado: (2012)

Integrating NMR and simulations reveals motions in the UUCG tetraloop
por: Bottaro, Sandro, et al.
Publicado: (2020)

Influence of ground-state structure and Mg(2+) binding on folding kinetics of the guanine-sensing riboswitch aptamer domain
por: Buck, Janina, et al.
Publicado: (2011)

In vitro selected GUAA tetraloop-binding receptors with structural plasticity and evolvability towards natural RNA structural modules
por: Zakrevsky, Paul, et al.
Publicado: (2021)

Structural effects of m(6)A modification of the Xist A-repeat AUCG tetraloop and its recognition by YTHDC1
por: Jones, Alisha N, et al.
Publicado: (2022)

NMR resonance assignments for a docking domain pair with an attached thiolation domain from the PAX peptide-producing NRPS from Xenorhabdus cabanillasii
por: Watzel, Jonas, et al.
Publicado: (2021)

A detailed picture of a protein–carbohydrate hydrogen-bonding network revealed by NMR and MD simulations
por: Nestor, Gustav, et al.
Publicado: (2020)

An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitch
por: Krepl, Miroslav, et al.
Publicado: (2018)

Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution
por: Rinnenthal, Jörg, et al.
Publicado: (2010)

Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop
por: Oxenfarth, Andreas, et al.
Publicado: (2023)

NMR structure of the Vibrio vulnificus ribosomal protein S1 domains D3 and D4 provides insights into molecular recognition of single-stranded RNAs
por: Qureshi, Nusrat Shahin, et al.
Publicado: (2021)

Synergy between NMR measurements and MD simulations of protein/RNA complexes: application to the RRMs, the most common RNA recognition motifs
por: Krepl, Miroslav, et al.
Publicado: (2016)

The conformational landscape of transcription intermediates involved in the regulation of the ZMP-sensing riboswitch from Thermosinus carboxydivorans
por: Binas, Oliver, et al.
Publicado: (2020)

Modulation of the stability of the Salmonella fourU-type RNA thermometer
por: Rinnenthal, Jörg, et al.
Publicado: (2011)

Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitch
por: Villa, Alessandra, et al.
Publicado: (2009)

Cooperation between a T Domain and a Minimal C‐Terminal Docking Domain to Enable Specific Assembly in a Multiprotein NRPS
por: Watzel, Jonas, et al.
Publicado: (2021)

Novel (13)C‐detected NMR Experiments for the Precise Detection of RNA Structure
por: Schnieders, Robbin, et al.
Publicado: (2019)

The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site
por: Taylor, Alexander B., et al.
Publicado: (2008)

Importance of Anion−π Interactions in RNA GAAA and GGAG Tetraloops: A Combined MD and QM Study
por: Esmaeeli, Reza, et al.
Publicado: (2021)

The intrinsic mechanics of B-DNA in solution characterized by NMR
por: Imeddourene, Akli Ben, et al.
Publicado: (2016)

Conserved nucleotides in an RNA essential for hepatitis B virus replication show distinct mobility patterns
por: Petzold, Katja, et al.
Publicado: (2007)

Thermodynamics and NMR studies on Duck, Heron and Human HBV encapsidation signals
por: Girard, Frederic C., et al.
Publicado: (2007)

Protein-observed 19F NMR of LecA from Pseudomonas aeruginosa
por: Shanina, Elena, et al.
Publicado: (2020)

Gemeinschaftlich in Krisenzeiten: NMR-Strukturbiologie gegen COVID-19
por: Schlundt, A., et al.
Publicado: (2020)

NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution
por: Podbevšek, Peter, et al.
Publicado: (2007)

Structure of the K-turn U4 RNA: a combined NMR and SANS study
por: Falb, Melanie, et al.
Publicado: (2010)

An NMR-based approach reveals the core structure of the functional domain of SINEUP lncRNAs
por: Ohyama, Takako, et al.
Publicado: (2020)

Impact of 5-formylcytosine on the melting kinetics of DNA by (1)H NMR chemical exchange
por: Dubini, Romeo C A, et al.
Publicado: (2020)

Development of a novel tobramycin dependent riboswitch
por: Kraus, Leon, et al.
Publicado: (2023)

NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site
por: Desjardins, Geneviève, et al.
Publicado: (2011)

NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region
por: Dai, Jixun, et al.
Publicado: (2006)

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA
por: Wang, Jiachen, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_p5ar2a1r2em7u8n6ml9ss8gmr4