Cargando…

PSAIA – Protein Structure and Interaction Analyzer

BACKGROUND: PSAIA (Protein Structure and Interaction Analyzer) was developed to compute geometric parameters for large sets of protein structures in order to predict and investigate protein-protein interaction sites. RESULTS: In addition to most relevant established algorithms, PSAIA offers a new me...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mihel, Josip, Šikić, Mile, Tomić, Sanja, Jeren, Branko, Vlahoviček, Kristian
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2364630/ https://www.ncbi.nlm.nih.gov/pubmed/18400099 http://dx.doi.org/10.1186/1472-6807-8-21

Ejemplares similares

Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests
por: Šikić, Mile, et al.
Publicado: (2009)

Systematic Comparison of Crystal and NMR Protein Structures Deposited in the Protein Data Bank
por: Sikic, Kresimir, et al.
Publicado: (2010)

BioMe: biologically relevant metals
por: Tus, Alan, et al.
Publicado: (2012)

ProPAS: standalone software to analyze protein properties
por: Wu, Songfeng, et al.
Publicado: (2012)

Biana: a software framework for compiling biological interactions and analyzing networks
por: Garcia-Garcia, Javier, et al.
Publicado: (2010)

Structural and functional analysis of cellular networks with CellNetAnalyzer
por: Klamt, Steffen, et al.
Publicado: (2007)

SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
por: Biro, Jan C, et al.
Publicado: (2005)

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets
por: Netanely, Dvir, et al.
Publicado: (2019)

MAP MUTATION: a program for analyzing mutations in protein sequences
por: Anwar, Tamanna, et al.
Publicado: (2006)

CellTrackVis: interactive browser-based visualization for analyzing cell trajectories and lineages
por: Shim, Changbeom, et al.
Publicado: (2023)

SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions
por: Aguirre-Plans, Joaquim, et al.
Publicado: (2021)

Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation
por: Golovko, Georgiy, et al.
Publicado: (2012)

PDA: Pooled DNA analyzer
por: Yang, Hsin-Chou, et al.
Publicado: (2006)

Snazer: the simulations and networks analyzer
por: Mazza, Tommaso, et al.
Publicado: (2010)

Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite
por: Cassan, Océane, et al.
Publicado: (2021)

MPDA: Microarray pooled DNA analyzer
por: Yang, Hsin-Chou, et al.
Publicado: (2008)

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy
por: Guerler, Aysam, et al.
Publicado: (2023)

An R package for analyzing and modeling ranking data
por: Lee, Paul H, et al.
Publicado: (2013)

Storing and analyzing a genome on a blockchain
por: Gürsoy, Gamze, et al.
Publicado: (2022)

Nemo: a computational tool for analyzing nematode locomotion
por: Tsibidis, George D, et al.
Publicado: (2007)

DMET-Analyzer: automatic analysis of Affymetrix DMET Data
por: Guzzi, Pietro Hiram, et al.
Publicado: (2012)

Analyzing huge pathology images with open source software
por: Deroulers, Christophe, et al.
Publicado: (2013)

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
por: Clarke, Erik L., et al.
Publicado: (2019)

PartCrafter: find, generate and analyze BioParts
por: Scher, Emily, et al.
Publicado: (2019)

MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences
por: Barsnes, Harald, et al.
Publicado: (2006)

Kismeth: Analyzer of plant methylation states through bisulfite sequencing
por: Gruntman, Eyal, et al.
Publicado: (2008)

Computing and visually analyzing mutual information in molecular co-evolution
por: Bremm, Sebastian, et al.
Publicado: (2010)

Quartet decomposition server: a platform for analyzing phylogenetic trees
por: Mao, Fenglou, et al.
Publicado: (2012)

RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures
por: Pietal, Michal J, et al.
Publicado: (2012)

NOXclass: prediction of protein-protein interaction types
por: Zhu, Hongbo, et al.
Publicado: (2006)

Array-A-Lizer: A serial DNA microarray quality analyzer
por: Petri, Andreas, et al.
Publicado: (2004)

Fast-Find: A novel computational approach to analyzing combinatorial motifs
por: Hamady, Micah, et al.
Publicado: (2006)

InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data
por: Viswanath, Lalitha, et al.
Publicado: (2005)

CARMA: A platform for analyzing microarray datasets that incorporate replicate measures
por: Greer, Kevin A, et al.
Publicado: (2006)

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
por: Toedling, Joern, et al.
Publicado: (2007)

PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
por: Salmon-Divon, Mali, et al.
Publicado: (2010)

APM_GUI: analyzing particle movement on the cell membrane and determining confinement
por: Menchón, Silvia A, et al.
Publicado: (2012)

pkDACLASS: Open source software for analyzing MALDI-TOF data
por: Ndukum, Juliet, et al.
Publicado: (2011)

GelJ – a tool for analyzing DNA fingerprint gel images
por: Heras, Jónathan, et al.
Publicado: (2015)

Pathogen metadata platform: software for accessing and analyzing pathogen strain information
por: Chang, Wenling E., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_kav4n7anciji1b5nt6832635sk