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Engineering BioBrick vectors from BioBrick parts

BACKGROUND: The underlying goal of synthetic biology is to make the process of engineering biological systems easier. Recent work has focused on defining and developing standard biological parts. The technical standard that has gained the most traction in the synthetic biology community is the BioBr...

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Detalles Bibliográficos
Autores principales: Shetty, Reshma P, Endy, Drew, Knight, Thomas F
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2373286/
https://www.ncbi.nlm.nih.gov/pubmed/18410688
http://dx.doi.org/10.1186/1754-1611-2-5
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author Shetty, Reshma P
Endy, Drew
Knight, Thomas F
author_facet Shetty, Reshma P
Endy, Drew
Knight, Thomas F
author_sort Shetty, Reshma P
collection PubMed
description BACKGROUND: The underlying goal of synthetic biology is to make the process of engineering biological systems easier. Recent work has focused on defining and developing standard biological parts. The technical standard that has gained the most traction in the synthetic biology community is the BioBrick standard for physical composition of genetic parts. Parts that conform to the BioBrick assembly standard are BioBrick standard biological parts. To date, over 2,000 BioBrick parts have been contributed to, and are available from, the Registry of Standard Biological Parts. RESULTS: Here we extended the same advantages of BioBrick standard biological parts to the plasmid-based vectors that are used to provide and propagate BioBrick parts. We developed a process for engineering BioBrick vectors from BioBrick parts. We designed a new set of BioBrick parts that encode many useful vector functions. We combined the new parts to make a BioBrick base vector that facilitates BioBrick vector construction. We demonstrated the utility of the process by constructing seven new BioBrick vectors. We also successfully used the resulting vectors to assemble and propagate other BioBrick standard biological parts. CONCLUSION: We extended the principles of part reuse and standardization to BioBrick vectors. As a result, myriad new BioBrick vectors can be readily produced from all existing and newly designed BioBrick parts. We invite the synthetic biology community to (1) use the process to make and share new BioBrick vectors; (2) expand the current collection of BioBrick vector parts; and (3) characterize and improve the available collection of BioBrick vector parts.
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spelling pubmed-23732862008-05-07 Engineering BioBrick vectors from BioBrick parts Shetty, Reshma P Endy, Drew Knight, Thomas F J Biol Eng Methodology BACKGROUND: The underlying goal of synthetic biology is to make the process of engineering biological systems easier. Recent work has focused on defining and developing standard biological parts. The technical standard that has gained the most traction in the synthetic biology community is the BioBrick standard for physical composition of genetic parts. Parts that conform to the BioBrick assembly standard are BioBrick standard biological parts. To date, over 2,000 BioBrick parts have been contributed to, and are available from, the Registry of Standard Biological Parts. RESULTS: Here we extended the same advantages of BioBrick standard biological parts to the plasmid-based vectors that are used to provide and propagate BioBrick parts. We developed a process for engineering BioBrick vectors from BioBrick parts. We designed a new set of BioBrick parts that encode many useful vector functions. We combined the new parts to make a BioBrick base vector that facilitates BioBrick vector construction. We demonstrated the utility of the process by constructing seven new BioBrick vectors. We also successfully used the resulting vectors to assemble and propagate other BioBrick standard biological parts. CONCLUSION: We extended the principles of part reuse and standardization to BioBrick vectors. As a result, myriad new BioBrick vectors can be readily produced from all existing and newly designed BioBrick parts. We invite the synthetic biology community to (1) use the process to make and share new BioBrick vectors; (2) expand the current collection of BioBrick vector parts; and (3) characterize and improve the available collection of BioBrick vector parts. BioMed Central 2008-04-14 /pmc/articles/PMC2373286/ /pubmed/18410688 http://dx.doi.org/10.1186/1754-1611-2-5 Text en Copyright © 2008 Shetty et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methodology
Shetty, Reshma P
Endy, Drew
Knight, Thomas F
Engineering BioBrick vectors from BioBrick parts
title Engineering BioBrick vectors from BioBrick parts
title_full Engineering BioBrick vectors from BioBrick parts
title_fullStr Engineering BioBrick vectors from BioBrick parts
title_full_unstemmed Engineering BioBrick vectors from BioBrick parts
title_short Engineering BioBrick vectors from BioBrick parts
title_sort engineering biobrick vectors from biobrick parts
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2373286/
https://www.ncbi.nlm.nih.gov/pubmed/18410688
http://dx.doi.org/10.1186/1754-1611-2-5
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