Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end s...

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Detalles Bibliográficos
Autores principales: Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, Mullikin, James C, Maher, Christopher, Nelson, William, Wissotski, Marina, Braidotti, Michele, Kudrna, David, Goicoechea, José Luis, Stein, Lincoln, Ware, Doreen, Jackson, Scott A, Soderlund, Carol, Wing, Rod A
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374706/
https://www.ncbi.nlm.nih.gov/pubmed/18304353
http://dx.doi.org/10.1186/gb-2008-9-2-r45
Descripción
Sumario:We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date.

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