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Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end s...
| Autores principales: | , , , , , , , , , , , , , , , , , |
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2008
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374706/ https://www.ncbi.nlm.nih.gov/pubmed/18304353 http://dx.doi.org/10.1186/gb-2008-9-2-r45 |
| _version_ | 1782154516819345408 |
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| author | Kim, HyeRan Hurwitz, Bonnie Yu, Yeisoo Collura, Kristi Gill, Navdeep SanMiguel, Phillip Mullikin, James C Maher, Christopher Nelson, William Wissotski, Marina Braidotti, Michele Kudrna, David Goicoechea, José Luis Stein, Lincoln Ware, Doreen Jackson, Scott A Soderlund, Carol Wing, Rod A |
| author_facet | Kim, HyeRan Hurwitz, Bonnie Yu, Yeisoo Collura, Kristi Gill, Navdeep SanMiguel, Phillip Mullikin, James C Maher, Christopher Nelson, William Wissotski, Marina Braidotti, Michele Kudrna, David Goicoechea, José Luis Stein, Lincoln Ware, Doreen Jackson, Scott A Soderlund, Carol Wing, Rod A |
| author_sort | Kim, HyeRan |
| collection | PubMed |
| description | We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date. |
| format | Text |
| id | pubmed-2374706 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2008 |
| publisher | BioMed Central |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-23747062008-05-09 Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza Kim, HyeRan Hurwitz, Bonnie Yu, Yeisoo Collura, Kristi Gill, Navdeep SanMiguel, Phillip Mullikin, James C Maher, Christopher Nelson, William Wissotski, Marina Braidotti, Michele Kudrna, David Goicoechea, José Luis Stein, Lincoln Ware, Doreen Jackson, Scott A Soderlund, Carol Wing, Rod A Genome Biol Method We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date. BioMed Central 2008 2008-02-28 /pmc/articles/PMC2374706/ /pubmed/18304353 http://dx.doi.org/10.1186/gb-2008-9-2-r45 Text en Copyright © 2008 Kim et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Method Kim, HyeRan Hurwitz, Bonnie Yu, Yeisoo Collura, Kristi Gill, Navdeep SanMiguel, Phillip Mullikin, James C Maher, Christopher Nelson, William Wissotski, Marina Braidotti, Michele Kudrna, David Goicoechea, José Luis Stein, Lincoln Ware, Doreen Jackson, Scott A Soderlund, Carol Wing, Rod A Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title | Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title_full | Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title_fullStr | Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title_full_unstemmed | Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title_short | Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza |
| title_sort | construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus oryza |
| topic | Method |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374706/ https://www.ncbi.nlm.nih.gov/pubmed/18304353 http://dx.doi.org/10.1186/gb-2008-9-2-r45 |
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