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Stability analysis of genetic regulatory network with additive noises

BACKGROUND: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network components and transcriptional rates are critical to the output behavior of the system. Though transcriptional rates can...

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Detalles Bibliográficos
Autores principales: Jin, Yufang, Lindsey, Merry
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386064/
https://www.ncbi.nlm.nih.gov/pubmed/18366611
http://dx.doi.org/10.1186/1471-2164-9-S1-S21
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author Jin, Yufang
Lindsey, Merry
author_facet Jin, Yufang
Lindsey, Merry
author_sort Jin, Yufang
collection PubMed
description BACKGROUND: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network components and transcriptional rates are critical to the output behavior of the system. Though transcriptional rates cannot be measured in vivo, biologists have shown that they are alterable through artificial factors in vitro. RESULTS: This study presents the theoretical research work on a novel nonlinear control and stability analysis of genetic regulatory networks. The proposed control scheme can drive the genetic regulatory network to desired levels by adjusting transcriptional rates. Asymptotic stability proof is conducted with Lyapunov argument for both noise-free and additive noises cases. Computer simulation results show the effectiveness of the control design and robustness of the regulation scheme with additive noises. CONCLUSIONS: With the knowledge of interaction between transcriptional factors and gene products, the research results can be applied in the design of model-based experiments to regulate gene expression profiles.
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spelling pubmed-23860642008-05-15 Stability analysis of genetic regulatory network with additive noises Jin, Yufang Lindsey, Merry BMC Genomics Research BACKGROUND: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network components and transcriptional rates are critical to the output behavior of the system. Though transcriptional rates cannot be measured in vivo, biologists have shown that they are alterable through artificial factors in vitro. RESULTS: This study presents the theoretical research work on a novel nonlinear control and stability analysis of genetic regulatory networks. The proposed control scheme can drive the genetic regulatory network to desired levels by adjusting transcriptional rates. Asymptotic stability proof is conducted with Lyapunov argument for both noise-free and additive noises cases. Computer simulation results show the effectiveness of the control design and robustness of the regulation scheme with additive noises. CONCLUSIONS: With the knowledge of interaction between transcriptional factors and gene products, the research results can be applied in the design of model-based experiments to regulate gene expression profiles. BioMed Central 2008-03-20 /pmc/articles/PMC2386064/ /pubmed/18366611 http://dx.doi.org/10.1186/1471-2164-9-S1-S21 Text en Copyright © 2008 Jin and Lindsey; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Jin, Yufang
Lindsey, Merry
Stability analysis of genetic regulatory network with additive noises
title Stability analysis of genetic regulatory network with additive noises
title_full Stability analysis of genetic regulatory network with additive noises
title_fullStr Stability analysis of genetic regulatory network with additive noises
title_full_unstemmed Stability analysis of genetic regulatory network with additive noises
title_short Stability analysis of genetic regulatory network with additive noises
title_sort stability analysis of genetic regulatory network with additive noises
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386064/
https://www.ncbi.nlm.nih.gov/pubmed/18366611
http://dx.doi.org/10.1186/1471-2164-9-S1-S21
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