Cargando…

High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy

High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by...

Descripción completa

Detalles Bibliográficos
Autores principales: Korukottu, Jegannath, Schneider, Robert, Vijayan, Vinesh, Lange, Adam, Pongs, Olaf, Becker, Stefan, Baldus, Marc, Zweckstetter, Markus
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387072/
https://www.ncbi.nlm.nih.gov/pubmed/18523586
http://dx.doi.org/10.1371/journal.pone.0002359
_version_ 1782155287359127552
author Korukottu, Jegannath
Schneider, Robert
Vijayan, Vinesh
Lange, Adam
Pongs, Olaf
Becker, Stefan
Baldus, Marc
Zweckstetter, Markus
author_facet Korukottu, Jegannath
Schneider, Robert
Vijayan, Vinesh
Lange, Adam
Pongs, Olaf
Becker, Stefan
Baldus, Marc
Zweckstetter, Markus
author_sort Korukottu, Jegannath
collection PubMed
description High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by solution NMR. Using an iterative assignment and structure calculation protocol, a large number of distance restraints was extracted from (1)H/(1)H mixing experiments recorded on a single uniformly labeled sample under magic angle spinning conditions. The calculated structure has a coordinate precision of 0.6 Å and 1.3 Å for the backbone and side chain heavy atoms, respectively, and deviates from the structure observed in solution. The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins.
format Text
id pubmed-2387072
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-23870722008-06-04 High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy Korukottu, Jegannath Schneider, Robert Vijayan, Vinesh Lange, Adam Pongs, Olaf Becker, Stefan Baldus, Marc Zweckstetter, Markus PLoS One Research Article High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by solution NMR. Using an iterative assignment and structure calculation protocol, a large number of distance restraints was extracted from (1)H/(1)H mixing experiments recorded on a single uniformly labeled sample under magic angle spinning conditions. The calculated structure has a coordinate precision of 0.6 Å and 1.3 Å for the backbone and side chain heavy atoms, respectively, and deviates from the structure observed in solution. The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins. Public Library of Science 2008-06-04 /pmc/articles/PMC2387072/ /pubmed/18523586 http://dx.doi.org/10.1371/journal.pone.0002359 Text en Korukottu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Korukottu, Jegannath
Schneider, Robert
Vijayan, Vinesh
Lange, Adam
Pongs, Olaf
Becker, Stefan
Baldus, Marc
Zweckstetter, Markus
High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title_full High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title_fullStr High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title_full_unstemmed High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title_short High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
title_sort high-resolution 3d structure determination of kaliotoxin by solid-state nmr spectroscopy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387072/
https://www.ncbi.nlm.nih.gov/pubmed/18523586
http://dx.doi.org/10.1371/journal.pone.0002359
work_keys_str_mv AT korukottujegannath highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT schneiderrobert highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT vijayanvinesh highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT langeadam highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT pongsolaf highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT beckerstefan highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT baldusmarc highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy
AT zweckstettermarkus highresolution3dstructuredeterminationofkaliotoxinbysolidstatenmrspectroscopy