Cargando…

Biocomputational prediction of small non-coding RNAs in Streptomyces

BACKGROUND: The first systematic study of small non-coding RNAs (sRNA, ncRNA) in Streptomyces is presented. Except for a few exceptions, the Streptomyces sRNAs, as well as the sRNAs in other genera of the Actinomyces group, have remained unstudied. This study was based on sequence conservation in in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pánek, Josef, Bobek, Jan, Mikulík, Karel, Basler, Marek, Vohradský, Jiří
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2422843/ https://www.ncbi.nlm.nih.gov/pubmed/18477385 http://dx.doi.org/10.1186/1471-2164-9-217

Ejemplares similares

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures
por: Pánek, Josef, et al.
Publicado: (2011)

rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output
por: Schwarz, Marek, et al.
Publicado: (2020)

Biocomputational prediction of non-coding RNAs in model cyanobacteria
por: Voß, Björn, et al.
Publicado: (2009)

tmRNA of Streptomyces collinus and Streptomyces griseus during the growth and in the presence of antibiotics
por: Palečková, Petra, et al.
Publicado: (2009)

Small non-coding RNAs in Streptomyces coelicolor
por: Swiercz, Julia P., et al.
Publicado: (2008)

DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor
por: Šmídová, Klára, et al.
Publicado: (2019)

Biocomputing
por: Pardalos, Panos M, et al.
Publicado: (2002)

rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
por: Jelínek, Jan, et al.
Publicado: (2019)

Deductive Biocomputing
por: Shrager, Jeff, et al.
Publicado: (2007)

Parallel biocomputing
por: Kompass, Kenneth S, et al.
Publicado: (2011)

Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation
por: Vohradsky, Jiri, et al.
Publicado: (2010)

Global Features of Gene Expression on the Proteome and Transcriptome Levels in S. coelicolor during Germination
por: Strakova, Eva, et al.
Publicado: (2013)

Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor
por: Bobek, Jan, et al.
Publicado: (2014)

Biocomputing enters its adolescence
por: Sunyaev, Shamil
Publicado: (2005)

Pathways to cellular supremacy in biocomputing
por: Grozinger, Lewis, et al.
Publicado: (2019)

An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5′ UTRs and its implications for eukaryotic gene translation regulation
por: Pánek, Josef, et al.
Publicado: (2013)

A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor
por: To, Cuong C, et al.
Publicado: (2007)

Groups: knowledge spreadsheets for symbolic biocomputing
por: Travers, Michael, et al.
Publicado: (2013)

Synthesis of control unit for future biocomputer
por: Lin, Chun-Liang, et al.
Publicado: (2018)

The unequivocal preponderance of biocomputation in clinical virology
por: Chun, Sechul, et al.
Publicado: (2018)

RNase III-Binding-mRNAs Revealed Novel Complementary Transcripts in Streptomyces
por: Šetinová, Dita, et al.
Publicado: (2018)

Biocomputing drug repurposing toward targeted therapies
por: Cardone, Luca
Publicado: (2016)

Biocomputational Screening of Natural Compounds against Acetylcholinesterase
por: Ahmad, Syed Sayeed, et al.
Publicado: (2021)

Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria
por: Moody, Matthew J, et al.
Publicado: (2013)

7th Molecular Electronics and BioComputing Symposium
Publicado: (1997)

Biocomputing and Synthetic Biology in Cells: Cells Special Issue
por: Cui, Feifei, et al.
Publicado: (2020)

Formal Semantics and Verification of Network-Based Biocomputation Circuits
por: Aluf-Medina, Michelle, et al.
Publicado: (2020)

Bioinformatics tools developed to support BioCompute Objects
por: Patel, Janisha A, et al.
Publicado: (2021)

Nanolithographic Fabrication Technologies for Network-Based Biocomputation Devices
por: Meinecke, Christoph R., et al.
Publicado: (2023)

Novel classes of non-coding RNAs and cancer
por: Sana, Jiri, et al.
Publicado: (2012)

Review on ''Bioinformatics, Biocomputing and Perl'' by Michael Moorhouse and Paul Barry
por: Cherkasov, Artem
Publicado: (2004)

PAT: a protein analysis toolkit for integrated biocomputing on the web
por: Gracy, Jérôme, et al.
Publicado: (2005)

Biocomputational Characterization and Evolutionary Analysis of Bubaline Dicer1 Enzyme
por: Singh, Jasdeep, et al.
Publicado: (2015)

Programmable intracellular DNA biocomputing circuits for reliable cell recognitions
por: Gong, Xue, et al.
Publicado: (2019)

Development of Bioelectronic Devices Using Bionanohybrid Materials for Biocomputation System
por: Yoon, Jinho, et al.
Publicado: (2019)

Trumpet is an operating system for simple and robust cell-free biocomputing
por: Sharon, Judee A., et al.
Publicado: (2023)

A Waking Review: Old and Novel Insights into the Spore Germination in Streptomyces
por: Bobek, Jan, et al.
Publicado: (2017)

High-Performance Biocomputing in Synthetic Biology–Integrated Transcriptional and Metabolic Circuits
por: Goñi-Moreno, Angel, et al.
Publicado: (2019)

Orthogonal Light-Activated DNA for Patterned Biocomputing within Synthetic Cells
por: Hartmann, Denis, et al.
Publicado: (2023)

The epitranscriptome of small non-coding RNAs
por: Li, Xiaoyu, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_h1dg31m4isl3m9bglr9mv042v5