FASH: A web application for nucleotides sequence search

FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a query sequence and a long text-sequence (e.g, the human genome), FASH detects subsequences within the text that are remotel...

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Detalles Bibliográficos
Autores principales: Veksler-Lublinksy, Isana, Barash, Danny, Avisar, Chai, Troim, Einav, Chew, Paul, Kedem, Klara
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Brief Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2426692/
https://www.ncbi.nlm.nih.gov/pubmed/18505581
http://dx.doi.org/10.1186/1751-0473-3-9
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author Veksler-Lublinksy, Isana
Barash, Danny
Avisar, Chai
Troim, Einav
Chew, Paul
Kedem, Klara
author_facet Veksler-Lublinksy, Isana
Barash, Danny
Avisar, Chai
Troim, Einav
Chew, Paul
Kedem, Klara
author_sort Veksler-Lublinksy, Isana
collection PubMed
description FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a query sequence and a long text-sequence (e.g, the human genome), FASH detects subsequences within the text that are remotely-similar to the query. FASH offers an alternative approach to Blast/Fasta for querying long RNA/DNA sequences. FASH differs from these other approaches in that it does not depend on the existence of contiguous seed-sequences in its initial detection phase. The FASH web server is user friendly and very easy to operate. FASH can be accessed at (secured website)
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spelling pubmed-24266922008-06-12 FASH: A web application for nucleotides sequence search Veksler-Lublinksy, Isana Barash, Danny Avisar, Chai Troim, Einav Chew, Paul Kedem, Klara Source Code Biol Med Brief Reports FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a query sequence and a long text-sequence (e.g, the human genome), FASH detects subsequences within the text that are remotely-similar to the query. FASH offers an alternative approach to Blast/Fasta for querying long RNA/DNA sequences. FASH differs from these other approaches in that it does not depend on the existence of contiguous seed-sequences in its initial detection phase. The FASH web server is user friendly and very easy to operate. FASH can be accessed at (secured website) BioMed Central 2008-05-27 /pmc/articles/PMC2426692/ /pubmed/18505581 http://dx.doi.org/10.1186/1751-0473-3-9 Text en Copyright © 2008 Veksler-Lublinksy et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Reports
Veksler-Lublinksy, Isana
Barash, Danny
Avisar, Chai
Troim, Einav
Chew, Paul
Kedem, Klara
FASH: A web application for nucleotides sequence search
title FASH: A web application for nucleotides sequence search
title_full FASH: A web application for nucleotides sequence search
title_fullStr FASH: A web application for nucleotides sequence search
title_full_unstemmed FASH: A web application for nucleotides sequence search
title_short FASH: A web application for nucleotides sequence search
title_sort fash: a web application for nucleotides sequence search
topic Brief Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2426692/
https://www.ncbi.nlm.nih.gov/pubmed/18505581
http://dx.doi.org/10.1186/1751-0473-3-9
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AT avisarchai fashawebapplicationfornucleotidessequencesearch
AT troimeinav fashawebapplicationfornucleotidessequencesearch
AT chewpaul fashawebapplicationfornucleotidessequencesearch
AT kedemklara fashawebapplicationfornucleotidessequencesearch

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