Cytoscape ESP: simple search of complex biological networks

Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search...

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Detalles Bibliográficos
Autores principales: Ashkenazi, Maital, Bader, Gary D., Kuchinsky, Allan, Moshelion, Menachem, States, David J.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427162/
https://www.ncbi.nlm.nih.gov/pubmed/18445605
http://dx.doi.org/10.1093/bioinformatics/btn208
Descripción
Sumario:Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. Availabiity: http://chianti.ucsd.edu/cyto_web/plugins/ Contact: ashkenaz@agri.huji.ac.il

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