Cytoscape ESP: simple search of complex biological networks

Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search...

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Detalles Bibliográficos
Autores principales: Ashkenazi, Maital, Bader, Gary D., Kuchinsky, Allan, Moshelion, Menachem, States, David J.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427162/
https://www.ncbi.nlm.nih.gov/pubmed/18445605
http://dx.doi.org/10.1093/bioinformatics/btn208
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author Ashkenazi, Maital
Bader, Gary D.
Kuchinsky, Allan
Moshelion, Menachem
States, David J.
author_facet Ashkenazi, Maital
Bader, Gary D.
Kuchinsky, Allan
Moshelion, Menachem
States, David J.
author_sort Ashkenazi, Maital
collection PubMed
description Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. Availabiity: http://chianti.ucsd.edu/cyto_web/plugins/ Contact: ashkenaz@agri.huji.ac.il
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spelling pubmed-24271622009-02-25 Cytoscape ESP: simple search of complex biological networks Ashkenazi, Maital Bader, Gary D. Kuchinsky, Allan Moshelion, Menachem States, David J. Bioinformatics Applications Notes Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. Availabiity: http://chianti.ucsd.edu/cyto_web/plugins/ Contact: ashkenaz@agri.huji.ac.il Oxford University Press 2008-06-15 2008-04-28 /pmc/articles/PMC2427162/ /pubmed/18445605 http://dx.doi.org/10.1093/bioinformatics/btn208 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Ashkenazi, Maital
Bader, Gary D.
Kuchinsky, Allan
Moshelion, Menachem
States, David J.
Cytoscape ESP: simple search of complex biological networks
title Cytoscape ESP: simple search of complex biological networks
title_full Cytoscape ESP: simple search of complex biological networks
title_fullStr Cytoscape ESP: simple search of complex biological networks
title_full_unstemmed Cytoscape ESP: simple search of complex biological networks
title_short Cytoscape ESP: simple search of complex biological networks
title_sort cytoscape esp: simple search of complex biological networks
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427162/
https://www.ncbi.nlm.nih.gov/pubmed/18445605
http://dx.doi.org/10.1093/bioinformatics/btn208
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