Cargando…

Functional importance of different patterns of correlation between adjacent cassette exons in human and mouse

BACKGROUND: Alternative splicing expands transcriptome diversity and plays an important role in regulation of gene expression. Previous studies focus on the regulation of a single cassette exon, but recent experiments indicate that multiple cassette exons within a gene may interact with each other....

Descripción completa

Detalles Bibliográficos
Autores principales:	Peng, Tao, Xue, Chenghai, Bi, Jianning, Li, Tingting, Wang, Xiaowo, Zhang, Xuegong, Li, Yanda
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2432081/ https://www.ncbi.nlm.nih.gov/pubmed/18439302 http://dx.doi.org/10.1186/1471-2164-9-191

Ejemplares similares

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
por: Xue, Chenghai, et al.
Publicado: (2005)

Comparative Analysis and Classification of Cassette Exons and Constitutive Exons
por: Cui, Ying, et al.
Publicado: (2017)

SRSF9 Regulates Cassette Exon Splicing of Caspase-2 by Interacting with Its Downstream Exon
por: Ha, Jiyeon, et al.
Publicado: (2021)

Improved identification of conserved cassette exons using Bayesian networks
por: Sinha, Rileen, et al.
Publicado: (2008)

NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks
por: Wei, Zheng, et al.
Publicado: (2023)

Identification of alternative 5′/3′ splice sites based on the mechanism of splice site competition
por: Xia, Huiyu, et al.
Publicado: (2006)

Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis
por: Liu, Hui, et al.
Publicado: (2014)

The Evolutionarily Conserved Cassette Exon 7b Drives ERG's Oncogenic Properties
por: Jumbe, Samantha L., et al.
Publicado: (2018)

SRSF2 directly inhibits intron splicing to suppresses cassette exon inclusion
por: Moon, Heegyum, et al.
Publicado: (2017)

Activation of Cryptic 3′ Splice-Sites by SRSF2 Contributes to Cassette Exon Skipping
por: Moon, Heegyum, et al.
Publicado: (2019)

Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction
por: Hu, Tao, et al.
Publicado: (2021)

esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis
por: Wei, Zheng, et al.
Publicado: (2018)

Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins
por: Gurskaya, Nadya G., et al.
Publicado: (2012)

Novel Pathogenic Variants in a Cassette Exon of CCM2 in Patients With Cerebral Cavernous Malformations
por: Much, Christiane D., et al.
Publicado: (2019)

Poison cassette exon splicing of SRSF6 regulates nuclear speckle dispersal and the response to hypoxia
por: de Oliveira Freitas Machado, Camila, et al.
Publicado: (2023)

TLN1 contains a cancer-associated cassette exon that alters talin-1 mechanosensitivity
por: Gallego-Paez, Lina M., et al.
Publicado: (2023)

Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons
por: Dommel, Matthew, et al.
Publicado: (2020)

Floxed exon (Flexon): A flexibly positioned stop cassette for recombinase-mediated conditional gene expression
por: Shaffer, Justin M., et al.
Publicado: (2022)

CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation
por: Liu, Honglei, et al.
Publicado: (2015)

Computational prediction of CRISPR cassettes in gut metagenome samples from Chinese type-2 diabetic patients and healthy controls
por: Mangericao, Tatiana C., et al.
Publicado: (2016)

Alport syndrome caused by a COL4A5 deletion and exonization of an adjacent AluY
por: Nozu, Kandai, et al.
Publicado: (2014)

Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila
por: Gu, Jin, et al.
Publicado: (2007)

Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation
por: Valletti, Alessio, et al.
Publicado: (2010)

The identification of switch-like alternative splicing exons among multiple samples with RNA-Seq data
por: Qin, Zhiyi, et al.
Publicado: (2017)

Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human
por: Leparc, German Gaston, et al.
Publicado: (2007)

Comprehensive profiling of mRNA splicing indicates that GC content signals altered cassette exon inclusion in Ewing sarcoma
por: Graham, Garrett T, et al.
Publicado: (2022)

Exon Coverage Variations Between Cancer Tissues and Adjacent Non-Cancerous Tissues are Prognostic Factors in Gastric Cancer
por: Pan, Xuan, et al.
Publicado: (2020)

Absence of Repetitive Correlation Patterns Between Pairs of Adjacent Neocortical Neurons in vivo
por: Mogensen, Hannes, et al.
Publicado: (2019)

Widely Different Correlation Patterns Between Pairs of Adjacent Thalamic Neurons In vivo
por: Wahlbom, Anders, et al.
Publicado: (2021)

Expression pattern of human ATP-binding cassette transporters in skin
por: Takenaka, Saya, et al.
Publicado: (2013)

Selective substrate uptake: The role of ATP-binding cassette (ABC) importers in pathogenesis
por: Tanaka, Kari J., et al.
Publicado: (2017)

The importance of DNA methylation of exons on alternative splicing
por: Shayevitch, Ronna, et al.
Publicado: (2018)

POEM, A 3-dimensional exon taxonomy and patterns in untranslated exons
por: Knapp, Keith, et al.
Publicado: (2008)

Generation of a Mouse Full-length Balancer with Versatile Cassette-shuttling Selection Strategy
por: Ye, Zhisheng, et al.
Publicado: (2016)

Affy exon tissues: exon levels in normal tissues in human, mouse and rat
por: Pohl, Andrew A., et al.
Publicado: (2009)

Biological action at a distance: Correlated pattern formation in adjacent tessellation domains without communication
por: Brooke, John M., et al.
Publicado: (2022)

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome
por: Ji, Xinjun, et al.
Publicado: (2016)

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions
por: Chen, Shengquan, et al.
Publicado: (2021)

The clinical importance of tandem exon duplication-derived substitutions
por: Martinez Gomez, Laura, et al.
Publicado: (2021)

ATP-binding cassette (ABC) import systems of Mycobacterium tuberculosis: target for drug and vaccine development
por: Soni, Dharmendra Kumar, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_pitic5ug2mmrbj8a13qrrqtu2f